| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3557 |
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| Symbol | |
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| ID | 4280450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4226937 |
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| End bp | 4227917 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638136369 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_752223 |
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| Protein GI | 114564709 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.656396 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAATT CATCAAACTA CACTGCGGAT CATCTTCAAT CCTCTTCCCA AACACCAAAC
GCTGCCATTG CCGCTCAACC TTCGTATATT GTGTTGCCGC GTGCTAATGA ATTAGCTGGT
AAGCAATACC ACACAGCACT TGAGTTTTTG ATCGATCATT TTAAGCAAAT CGATCCCAGT
GTGTGGCAAC AACGGATCAA TGATGGCAAA GTGCATTGGC AAAATGGTGA GCTAATTACC
GCAGAGAGTG CCTATCAAGC CACTGCCAAA GTGTATTATT ACCGCGAAGT GCTGGCCGAA
ACGAAAGTGC CTTTTGCTGA GCAGGTGTTG TATCAAGATA ACGACACTAT TATTGTTTAT
AAACCGCATT TTTTACCCGT TACCCCAGGC GGAAATTACG TTAATGAATG TTTAGTACAT
CGTTTACGTA TCGCCACTCA AATAGATACG GTCGCACCGG CGCACAGGCT CGATAAAGAT
ACGGCTGGTG TGATGTTAAT GACGCTCAAT CCGCAAACAC GCCATGCATA TCATCAGCTG
TTTTTAGATG ACAAGATCAC TAAAGATTAT CAAGCAATCG CTAAATTAAC GCCTACGTTG
CTGAGTGAAT TTGCCGATAA TACTTGTATG CTTCCTATTC ATTGGACGGT TAAAAATCGT
ATTGTGGCGG CAAATCCCAG CTTTACTATG CAGGTGGTTG AAGGCGAGGC GAATAGCCAT
TCTGAAATCA GTTTAGTGGC GGTAAAAAAT GGTTTTGGCT TATTTGAGTT AAGTCCGATT
ACCGGTAAAA CTCATCAATT ACGTGTACAT ATGCAAAGTT TAGGTATGCC GATTTTACAC
GACCGCTTTT ATCCAGTACT ACTACCTAAA GGGCCGGATA ACTTTGATAA GCCGTTGCAG
TTGTTGGCTA AACGGTTGCG CTTTACCGAT CCCATCAGTG CTATTGAACA AGATTTTCAG
TGCCAAAGTT TGAATTTTTA G
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| Protein sequence | MPNSSNYTAD HLQSSSQTPN AAIAAQPSYI VLPRANELAG KQYHTALEFL IDHFKQIDPS
VWQQRINDGK VHWQNGELIT AESAYQATAK VYYYREVLAE TKVPFAEQVL YQDNDTIIVY
KPHFLPVTPG GNYVNECLVH RLRIATQIDT VAPAHRLDKD TAGVMLMTLN PQTRHAYHQL
FLDDKITKDY QAIAKLTPTL LSEFADNTCM LPIHWTVKNR IVAANPSFTM QVVEGEANSH
SEISLVAVKN GFGLFELSPI TGKTHQLRVH MQSLGMPILH DRFYPVLLPK GPDNFDKPLQ
LLAKRLRFTD PISAIEQDFQ CQSLNF
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