| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3355 |
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| Symbol | |
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| ID | 4280257 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 4003227 |
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| End bp | 4005716 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638136176 |
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| Product | ribonuclease R |
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| Protein accession | YP_752030 |
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| Protein GI | 114564516 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.334074 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCAACG ATCCTCATTT TGAGAGAGAA CAAGACAAGT ACGACAATCC TATTCCTAGC
CGTGAGTATA TTTTAGAATA CTTGCGCGCC CAAAAGTCTC CTGTTACCCG CGATAAAATA
GCTGAAGCAT TATCTATTAC AGATGAAGTG CCATTAGAGG CCCTACGTCG TCGTTTACGT
GCAATGGAAC GTGATGGCCA GCTAGTTTTT ACCCGCGGTC AAAGTTATGG CTTACCTGAA
CGAATGGATT TATTGTCTGG TACCGTTTTA GGCCATCGCG ATGGATTCGG CTTTTTTAAG
CCAGATGAAG GCGGTGATGA CTTATTTATT AATAATCGCG ACATGCTGAT GTATTTCCAT
GGCGATAAAG TGCTTGCTCA AAAAGCGGGT ACCGATCGTC GTGGTCGTCG CGAAGCACGA
ATAGTCCGCT TAGTTCATGA GCGAACGGCT GCATTAGTTG GCCGTTATCA TGTCGATGGC
GGCATGGGTT TTGTGATTGC TGACGACAGA CGCATCACCC AAGAAATATT AATCGCCAGC
GAAGATACAC TAGGCGCGCG TGCTGGTGAT GTTGTTGTGG TTGAGTTAAC TCGTCGCCCT
GGTCGTTTTG TTAAAGCGGC AGCGAAAGTG ACCGAAGTCT TAGGTAAGAC AATGGCACCG
GGTATGGAAA TTGAAATTGC ATTACGTAAT TATGATTTAC CACATACTTG GTCAGCGATT
ATTGAGAAAA AACTCAAACG TATTCCTGAC GAAGTTACCG AAGAAGATAA ATTAGGTCGC
GTAGATTTAC GTCATTTACC GTTAGTCACT ATTGATGGCG AAGATGCCCG TGATTTTGAT
GACGCGGTGT ATGCTGAGGC AAAACCAAGT GGTGGCTGGC GTTTATGGGT AGCAATTGCT
GATGTGAGTC ATTATGTACG CACTGATTCT GCCTTAGATA CTGAAGCGCG CTCACGTGGT
AACTCGGTAT ATTTCCCATC GCAAGTTATC CCAATGTTGC CTGAGAAAAT ATCTAATGGT
TTATGTTCAT TAAAGCCAAA AGTCGATCGT TTATGTATGG TCGCTGAAAT GACCATTTCT
GCAGCGGGTA AGTTATCGGG TACTAAGTTC TACCCTGCGG TAATGCACTC TCATGCACGT
TTTACCTATA CCCAAGTTGC CGACATGCTA GAAGGTGGCG CAATTGCTCC TGAGCATGAA
GCACTATTCC CACATTTGTT GTGTTTGCAG TCGTTATATC TGATCTTAGA TGAGCGCCGA
GCAGAGCGTG GGGCAATTGC TTTTGAAACA TTAGAAACCC AGTTCATTTT TAATGAGCAA
CGTAAAATTG ATAAAATTGT CCCAAGAGGC CGCAATCAAG CACATAAAAT CATTGAAGAA
TGTATGATTT TAGCCAATGT GGCGTCGGCG AAATTTGTTA AAAAACACAA AGGTGAAGTG
CTATATCGTG TTCACGAAGC ACCATCAGAG CAAAAACTGG CTAATTTTAA AGAGTTTCTT
GCTGAGCGCG GTTTAAGCAT GGATGGCGGA TTAGAACCGA CTCCGACTGA CTATCAAAAT
CTGATGTTAA AAATTGCTGA CCGTCCTGAC TTTGAGTTAA TTCAGGTGAT GTTATTGCGC
TCAATGCGCC AGGCCGTTTA CAGCCCAGAC AACGAAGGTC ACTTTGGTTT GGCATTAGAA
GCTTATTCGC ATTTTACGTC GCCAATTCGT CGTTATCCTG ATTTAGTTTT ACATCGAGTG
ATCAAATATT TACTCGCTAA AGAGCTGGGT AATGCCAACG ATAAATGGAC TCAAGATGGT
GGTTATCTCT ATCAGATTGA AGAGTTAGAT GCATTAGGTG AAGAATGTTC TACCACTGAG
CGTCGTGCAG ACGAAGCAAC CCGTGATGTG AGTGATTGGT TGAAATGTGA ATATATGCAA
GATCACGTCG GCGACACCTT CGACGCGGTC ATTGCCTCAG TCACTAGCTT TGGTTTATTT
GTCAGATTAA ACGAATTATT TATTGATGGG CTAGTACATA TTTCAAGTCT TGCCAGTGAC
TATTATCAAT TCGATCCAAT GCGTCAGCGG TTAATTGGTG AAAATTCTCG CCAAGTATAT
CAAGTCGGCG ATCCTGTGAC GGTTAAAGTT GCGGCGGTGA ATCTTGATGA TCGTCAAATT
GATTTATTGA TGGTAGGTGA CAACACTAAA GGTGCGGGTA AAACGGCGCG TAAAGGTAGC
AAGCCTACAA CCGCACGCCA GCGAGTCAAT GCAGAAGGTG CTAAGTCAGC ACGAGGTAAG
TCATCTGTAA AGTCTGATAA ACCTAAGTCT GACAAACCAA AGTCTGATAA GCCTAAAGCC
AGCAAGCGTC GTTCAAGCGG AAAAGCTTCA TCTCCAGCGG CAAAACCAGC GGCGGTAAAA
AAACCTTCTG CAGTTGCACA AAAATCGGAT GCAGCAAAAC CAGATTCTAG CGTTAAGAAA
AACCCTGCCA AGCGCAGCAA GAGAAAGTAA
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| Protein sequence | MINDPHFERE QDKYDNPIPS REYILEYLRA QKSPVTRDKI AEALSITDEV PLEALRRRLR
AMERDGQLVF TRGQSYGLPE RMDLLSGTVL GHRDGFGFFK PDEGGDDLFI NNRDMLMYFH
GDKVLAQKAG TDRRGRREAR IVRLVHERTA ALVGRYHVDG GMGFVIADDR RITQEILIAS
EDTLGARAGD VVVVELTRRP GRFVKAAAKV TEVLGKTMAP GMEIEIALRN YDLPHTWSAI
IEKKLKRIPD EVTEEDKLGR VDLRHLPLVT IDGEDARDFD DAVYAEAKPS GGWRLWVAIA
DVSHYVRTDS ALDTEARSRG NSVYFPSQVI PMLPEKISNG LCSLKPKVDR LCMVAEMTIS
AAGKLSGTKF YPAVMHSHAR FTYTQVADML EGGAIAPEHE ALFPHLLCLQ SLYLILDERR
AERGAIAFET LETQFIFNEQ RKIDKIVPRG RNQAHKIIEE CMILANVASA KFVKKHKGEV
LYRVHEAPSE QKLANFKEFL AERGLSMDGG LEPTPTDYQN LMLKIADRPD FELIQVMLLR
SMRQAVYSPD NEGHFGLALE AYSHFTSPIR RYPDLVLHRV IKYLLAKELG NANDKWTQDG
GYLYQIEELD ALGEECSTTE RRADEATRDV SDWLKCEYMQ DHVGDTFDAV IASVTSFGLF
VRLNELFIDG LVHISSLASD YYQFDPMRQR LIGENSRQVY QVGDPVTVKV AAVNLDDRQI
DLLMVGDNTK GAGKTARKGS KPTTARQRVN AEGAKSARGK SSVKSDKPKS DKPKSDKPKA
SKRRSSGKAS SPAAKPAAVK KPSAVAQKSD AAKPDSSVKK NPAKRSKRK
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