| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3254 |
|---|
| Symbol | |
|---|
| ID | 4280156 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3893198 |
|---|
| End bp | 3894748 |
|---|
| Gene Length | 1551 bp |
|---|
| Protein Length | 516 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638136072 |
|---|
| Product | anaerobic nitric oxide reductase transcription regulator |
|---|
| Protein accession | YP_751929 |
|---|
| Protein GI | 114564415 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTGA GTCAAGCAGA CTTAACCCGT ATCGCACTTG ATATTACCGC TAACTTATCT
AATCGAGACC GTTTTTCACG TTTATTAACC ACGGTAAGAG AAACGCTCGA TTGCGATGCT
GCGGCGCTAT TATCATTCCA AGGTCATCAA TTTACCCCTT TAGCAATTGA TGGGTTAAGT
GCTGACGTAC TTGGACGGCG CTTTATTTTA AACGAACATC CTAGGCTTGA AGCCATTGCT
CGAGCAGGAG ATATTGTCCG TTTCCCTTCC GATAGCGAGC TTGCGGATCC TTACGATGGC
TTAATCCCCA ATGTCGACGG CGACTTAAAA GTGCATGCCT GTATCGGCTT ACCGTTATTC
GCTAACGAGC AACTCATTGG CGCACTCACC ATCGATGCAC TCGACCCAAA CAAATTTGAT
CAATTCACCA ATAATGATTT ACGCAGTTTT AGTGCTATTG CTGCGGTTTC TTTAAACAAT
GCATTACTGA TAGATAAACT CGAAAAACAA GCCAACAATT TTACGATTCC GGATACTAAA
CCATCAGGGC AACTGCATGA AGAAACTGAA ATCATCGGTC AAGCGGATAA CCTTCTATCT
CTGCTTAATG AAGTCAATGT CGTCGCAGCA ACAGAGCTCA ATGTATTGAT TTTAGGAGAG
ACCGGTACCG GTAAAGAACT AATAGCCAAA GCCATTCACC AAAACTCTGT GCGAGCCAAT
AAGCCGCTAG TATATTTAAA TTGTGCCGCG CTGGCTGAAT CCGTTGCCGA AAGCGAACTC
TTCGGTCATG TCAAAGGGGC CTTTACAGGC GCAATTAGCC ATCGTAGCGG CAAATTTGAA
ATGGCCGATA AAGGCACCCT ATTTTTAGAT GAAATTGGCG AATTAGCACT TAATTTACAA
GCTAAATTGT TGCGAGTACT GCAATACGGG GATTTACAAA AAGTCGGTGA TGATCGTAGC
TTAAAAGTGG ATGTTCGTAT TATTGCTGCA ACCAATAAAG ATCTTAAAAA CGAAGTATTA
GCCGGACGAT TTAGATCTGA TTTATATCAT CGTTTAAGCG TGTTCCCGGT TATGGTTCCG
CCGCTAAGAG AACGTCAACA AGATATCCAT TTGTTAGCCG GATTCTTTAT CGAGCGCTAT
CGGCAACAAT TACACTTAGC CCATTTGGGG TTAGAGCCTT CATCACTGCA ATTACTCGAG
CAATATGATT GGCCTGGTAA CATTAGAGAA CTTGAGCATG CCATCCATCG AGCTGCGGTA
TTAGCCAAAT CACAAAGCCA AAAAGACGGT ATATGCATCA TTAAAAATAG TCATTTTGAA
TTTGCACAGC CATCGTCCAC TGCTATACAT TCAAACAAAA ATCTTCCGAT TAAACAGTCG
GTAACATCTT TACCACAAAC AAGCTTACGT GATGCAACAG ACCAGTTCCA AAACCAATTT
ATCCAACAGA TATATAGTCA ACAAGGGAGT AATTGGGCTG CAACCGCACG CCAATTGCAA
ATCGACTCGG GTAACTTACA TAGGCTAGCT AAACGCTTAG GATTAAAATA A
|
|---|
| Protein sequence | MALSQADLTR IALDITANLS NRDRFSRLLT TVRETLDCDA AALLSFQGHQ FTPLAIDGLS
ADVLGRRFIL NEHPRLEAIA RAGDIVRFPS DSELADPYDG LIPNVDGDLK VHACIGLPLF
ANEQLIGALT IDALDPNKFD QFTNNDLRSF SAIAAVSLNN ALLIDKLEKQ ANNFTIPDTK
PSGQLHEETE IIGQADNLLS LLNEVNVVAA TELNVLILGE TGTGKELIAK AIHQNSVRAN
KPLVYLNCAA LAESVAESEL FGHVKGAFTG AISHRSGKFE MADKGTLFLD EIGELALNLQ
AKLLRVLQYG DLQKVGDDRS LKVDVRIIAA TNKDLKNEVL AGRFRSDLYH RLSVFPVMVP
PLRERQQDIH LLAGFFIERY RQQLHLAHLG LEPSSLQLLE QYDWPGNIRE LEHAIHRAAV
LAKSQSQKDG ICIIKNSHFE FAQPSSTAIH SNKNLPIKQS VTSLPQTSLR DATDQFQNQF
IQQIYSQQGS NWAATARQLQ IDSGNLHRLA KRLGLK
|
|---|
| |