| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3169 |
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| Symbol | |
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| ID | 4280071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3792362 |
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| End bp | 3795868 |
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| Gene Length | 3507 bp |
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| Protein Length | 1168 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135987 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_751844 |
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| Protein GI | 114564330 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAGGCTT GGTTATCTAT CGATACTTGG TTGATCAGTT CAATTTCGAT TACTTATCTT
GCAATGCTGT TTGTGGTTGC ACAGTGGGGG CAAAATCGTT CCATAAAAAA ATTAACCCAA
AAGCCGTGGG TCTATAGCCT GTCGTTAGGG GTATGCTGCA CATCATGGGC GTTTTATGGC
ACCGTTGGAC AAGCTGCAAC AACCGGAGCC TGGCTGGCCC CCATTTATAT TGGTTCGATC
ATTTGCTTAG TACTAGCATG GCCGATGCTA ATGCGCACGT TGCAAATAAT CAAAAGCCAA
AACCTCACGT CTATTGCCGA CTTTATTGCG TGCCGTTTTG ACCGTTCGCC TAAAATTGCC
GCCAGCGTTG CCATAGTGTC ACTACTGGGA ACCATTCCTT ATATTGCCTT GCAGTTAAGG
GCCATCAGTA CCAGCTTTGA TTTACTAACA GGCACGTTTC AGTCCGGTAT TAGCACCGCA
TTTGTGGTGA CCATTGTATT AATTATCTTT AGTATTTTGT TCGGCACCCG CCAACTGTCT
GCCAGTAAAC ACAATCAAGG CTTAGTACTG GCTATTGCGT TTAGCTCTAT AGTGAAGTTA
TTTGCCCTGA CTGCCGTCGG TATTTTTGCC ACTTTCTTTA TATTCGATGG CTTTGGTGAT
TTACTGACTC AAGGCCAACA TATTAAACAA ACCAGCCAAT CAGACTCGAC TTACCTTGTG
ATTTCTCAAG TTATTTTGGG TGCTATTACT ATCTATGCGT TACCGCAACA ATTTCATATG
ATGATGATTG AAAACAATCA TGACGAAGAG CTCAAATCAG CACGTTGGAT GGTGCCGTTA
TACCTGTTAT TGATTAATAT TTTTGTATTG CCGATTGCAT TAGCCGGACA GCTTAGCTTC
CCAGGTGGCA GTGTCGGCGC AGATACCTAT GTGCTGACAT TACCGCTTTT TTATCAACAA
GCATGGCTAG GGATATTGGT TTATGTCGGT GGACTCGCGG CGGCAACGGC AATGGTTATT
GTGGCGGCGA TTGTATTGAG CACGATGATT TCGACAGAAA TTTTAACGCC ATTACTATTA
CGACTACCAA AATTTAGCTC TCAACAAACC CCGCAGTTAT CAGGTATTTT ATTAAATTTA
CGCCGTATCT CTATCGCGGT CATTTTATTA TCCGCTTTTG CATTTGAACG CTTTATCGAT
CAACAAAATC ATTTAGCCAG TATTGGCTTG TTGTCATTTG TGTTGTTATC TCAATTTGCG
CCCGCTGCGG TAGGCGCCTT ATATTGGCGA AATGCCACCA CCCAAGGTGC CTTTGTGGGG
CTCATAATGG GCAGTATTGT TTGGCTTTAT ACTCTACTAT TGCCGGCTAC TTTCCCCGAT
GCCCATTGGG TTAAATTTGG ATTATTTGAT ATTGCGTGGT TAACGCCGAC AGCCTTATTT
GGCTTAAGCG GTTTGGATAA TATTAGCCAC GGCGTATTTT ACAGTTTAGT GGCTAACATT
GGCTGCTTTG TGGTGATTTC ACTGCTTAAA GAACAAAGCG TTGGCGAGGT TTTACAAGCT
GACTTATTTG TAAACAGAAA ACAGATTCAA CTAGAACGGC ACTTATCCGT AGAGGATTTA
GCCAGTTTAT TAAATCGTTT TATTAACAAA GACGAAGCCG ATGCGCTTAT TGCAGAATCT
AAAAAACTCG CAGGCAAAGA TCAGCAGCAA CAGCTCGTTG ATTACACTCG CTTAAAACTG
TCTGGCGTAC TCGGTTCAGC GTCTACCAGA ATGGTGATGA GCGCCGCATC GCGCAGCCAG
CAAATGCCAT TAGAAGATGT AGTGAGCATT GTTGATGAAG CTAGCCAGAT ATTTGAATTT
AACCGTGAAC TCTTGCAATC TGGCGTAGAG AATATTGAGC AAGGGATCAG TGTTGTCGAC
GCCGATATGC GCTTAGTGGC TTGGAATCAA CGTTATATTG AACTGTTAGG TTACCCTAAA
GATTACGTCA GAGCGGGTCT GCACATTGAG CAGCTCATTA GATTTAATAT CGACAGAGGC
ATTATTGTCG GTAACGAGGC ACATGAGCTA GTGGAAAAAC GCTTAGCTCA TATGCGCAGT
GGTAGCCCTC ATCATTTTCA GCGCACTATG CTAGATGGAA AAGTGCTGGA AATTCGCGGG
CAAGCCATGC CAGGCGGAGG CTTTGTCAGT ACGTTTGCTG ATATTACTGC ACATATTGAA
GCAGAAAAAG CCTTACAACT GGCCAATGAA ACCCTTGAAA AACGGGTTGA AAGCCGCACC
CAAGAACTGG AAAAAGCCAA AGCTGAAGCG GAAGCTGCTA ATAGCAGTAA AACCCGCTTT
TTGGCCGCGG CCAGCCATGA CTTAATGCAA CCTTTTAATG CCTTAACCTT ATTTACTGAG
ATGCTAAAGC AAAGGGTTAA ATCAACTGAA CTGCATGACC TCGCAACCAA TATTGAAGAC
TCATTAAACG TGGTGGAGAG TTTACTATCC GATCTGGTTG AGATATCTCG CTTAGACAGT
AACTCGTTAA AAACTGAAAA AAGCCAATTT GCGATTGATG ATTTATTGTC AACGTTAGTC
AATGAATTTA ATGCATTATC GGTTCAACAA GGTATTGATT TTAACTACCA AATCTCTTCT
TGTTTTGTAG AAAGCGACCA AAGACTGCTG CGCCGTATTA TTCAGAACTT TTTATCTAAT
GCGTTTCATT ACTCCCCTTC GGGCAAACGC AATCAGCAAA TAACATCCCA AACCTCTTCG
CCTGACAATA AAGTAAATGG GCAGACTAGC AATACCGAGT TTGTCCCAAA AGTGTTATTA
GGCGTTAGGC GGCTTGAGCA CGCTTTATTA ATACAAGTTT GGGACAATGG CCCAGGTATT
CCGCTTGATA AACAGCAAGC CATTTTTTGT GAATTTGAAC GCTTAGAGCT CACTCGTGAA
ATTCCGGGAT TAGGACTAGG CTTGGCGATA TGCGATCGAA TTGCCAAGTT GTTGGATATC
AACATATCGC TGCATTCTGA AGTGGGTAAA GGCACGTGTT TTAGTGTTGA AATACCCCGT
GTATTACAGC AGAAAAAGCC AGTTAAAGTG ACTGAAACGG CCGAAGATGA CATAAGCAGT
GACAGCACTA ATATTACCGT GATGGTGATC GACAATGACG ACCTGATGCT AAAAGCGATC
TCCACATTGC TCAGCGATTG GGGATGTAAT GTCATTACCG CAAAAGACCA ACCCAGTGCC
ATACTGCAAT TGGCCAATAA CCCACAACCC AAACTGATTA TTGCTGACTA TCACTTAGAA
GATGATAAAA ATGGTGTGGA TTTAGTACAG TATTTATTAG CCCATCACCT GACGATAAAC
CGTACCCCAC CCACCTGTGT TATCTGCTCT GCCGACCCTT CTGAAGCAGT TAGACAACAC
ACCAGCAGTG CGCAATTTAG CTTTGTGCGT AAACCGCTTA AGGCAATAGC CTTAAAACGG
TTCATTAAAC AACTGACGCC TGAATAA
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| Protein sequence | MQAWLSIDTW LISSISITYL AMLFVVAQWG QNRSIKKLTQ KPWVYSLSLG VCCTSWAFYG
TVGQAATTGA WLAPIYIGSI ICLVLAWPML MRTLQIIKSQ NLTSIADFIA CRFDRSPKIA
ASVAIVSLLG TIPYIALQLR AISTSFDLLT GTFQSGISTA FVVTIVLIIF SILFGTRQLS
ASKHNQGLVL AIAFSSIVKL FALTAVGIFA TFFIFDGFGD LLTQGQHIKQ TSQSDSTYLV
ISQVILGAIT IYALPQQFHM MMIENNHDEE LKSARWMVPL YLLLINIFVL PIALAGQLSF
PGGSVGADTY VLTLPLFYQQ AWLGILVYVG GLAAATAMVI VAAIVLSTMI STEILTPLLL
RLPKFSSQQT PQLSGILLNL RRISIAVILL SAFAFERFID QQNHLASIGL LSFVLLSQFA
PAAVGALYWR NATTQGAFVG LIMGSIVWLY TLLLPATFPD AHWVKFGLFD IAWLTPTALF
GLSGLDNISH GVFYSLVANI GCFVVISLLK EQSVGEVLQA DLFVNRKQIQ LERHLSVEDL
ASLLNRFINK DEADALIAES KKLAGKDQQQ QLVDYTRLKL SGVLGSASTR MVMSAASRSQ
QMPLEDVVSI VDEASQIFEF NRELLQSGVE NIEQGISVVD ADMRLVAWNQ RYIELLGYPK
DYVRAGLHIE QLIRFNIDRG IIVGNEAHEL VEKRLAHMRS GSPHHFQRTM LDGKVLEIRG
QAMPGGGFVS TFADITAHIE AEKALQLANE TLEKRVESRT QELEKAKAEA EAANSSKTRF
LAAASHDLMQ PFNALTLFTE MLKQRVKSTE LHDLATNIED SLNVVESLLS DLVEISRLDS
NSLKTEKSQF AIDDLLSTLV NEFNALSVQQ GIDFNYQISS CFVESDQRLL RRIIQNFLSN
AFHYSPSGKR NQQITSQTSS PDNKVNGQTS NTEFVPKVLL GVRRLEHALL IQVWDNGPGI
PLDKQQAIFC EFERLELTRE IPGLGLGLAI CDRIAKLLDI NISLHSEVGK GTCFSVEIPR
VLQQKKPVKV TETAEDDISS DSTNITVMVI DNDDLMLKAI STLLSDWGCN VITAKDQPSA
ILQLANNPQP KLIIADYHLE DDKNGVDLVQ YLLAHHLTIN RTPPTCVICS ADPSEAVRQH
TSSAQFSFVR KPLKAIALKR FIKQLTPE
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