Gene Sfri_3129 details

Gene Information

• Locus tag: Sfri_3129
• ID: 4280032
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 3744436
• End bp: 3746442
• Gene Length: 2007 bp
• Protein Length: 668 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 638135948
• Product: outer membrane protein
• Protein accession: YP_751805
• Protein GI: 114564291
• TIGRFAM ID: [TIGR03509] decaheme-associated outer membrane protein, MtrB/PioB family

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGATTCA AATTTAACCT CATCACGTTA TCACTTCTCG CTATATCTGG CGCGATAACG 
GGCTCTGCAA TGGCGGCTGA CTTTGGCGTG AACAAGGCCA ATACTAGTAC CGTTAACCAA 
CAAGTATTTC AGTGTAAGCG CTGCCCTCAA GTTGCTGGTT ATACCGGCAC CATCGGGGTC 
AATGCCGCGT ATATTGACAG TGATGACATT CACTCTGGTA ATGCGTTTGG TACCGACAAT 
GACGGGGCTG ATGGCAGTGT GGATGCCGAT TTACATTATC GAAATACCGC AGGCTATAAA 
GCCAAGTTTC AGGCACACCA ATTAGGTTTG GATAACGGCT TTGCTCATCT TGAAGCGGGA 
AAGTCAGGCC ACTATAAACT GGTTGCCGAT TATCAACAGC TAACCCGCTA TCGGTCTGGC 
GATGCACGCA GTCAGTTATG GTACAAAGAC GGCGTACTGA CACCGAGTGA GCATACTCAA 
ATTCAGGAGC TCTCGCTGCA GAGGAACAAA GCTGGCTTGG GTTTGAGCTA TGGCCAAGAC 
TTTTATCAGG CTTATGTGCG TTATGAGCAC GAGAATAAAA CCGGTTACCA GAGCAGTAGT 
ATTGTCACTC CGCGTCCAGT TAATTTTGGC CTGCCAGTCG ATGCCAACAC TGATAACCTC 
ACCGCGGGGC TGTCATTGTC TGGCGATAGT TGGACTACCA ACCTGAATTA TTTCGTGAGC 
CAGTATAAAA ACGATGTTGA CGCATTAAGT CTTCCTTATT TGTATGACGT TTTTGCACCT 
GCTCCAGACA ATCAGGCTCA TCAAATTAGT TTGTCTGGCC AATATCAATT AAACCGCACC 
GTTATGAGTG GTCGCTTGGC ATCGGGCAAG ATGACCCAAG ATGATAATTT GATTCAAATG 
TCGGGTAATC CACTGCAAAA CTGGGACGGA GAAGTCGATA CCTTAGACGG CAAGCTGTCT 
GTCACTTCGC TGCTAAGCAA CAAGCTCAGA CTCGGCGGCA GTGTCGATTA CAGCAAGCGT 
GATAATAAGG GATCGGTATG GGAATTCGCT CAATATGAAG TGAACGGTAT ATCGGGGGCA 
TTTAAACAGA ATATCCCTTT AGACACCGAA CGCCGCGGCT TCAAGCTTAA TGCCAGTTAC 
CGCCTAAGCA GTGACTATCG CTTACAGGCT GGCTATGACC GCAAAGAAAT GGAGCGCAGT 
TATGGTGACC GTGAACAGAC TAATGATGAC GGCCTATGGG CCAAGCTCAA TGTCCGTGCA 
ATGGATGACA TCAAGCTTAA ATTTAAGGCC AGCCTCGATA ACCGTGGCGG CAGCGAATAT 
CAAACTAGCG AATTGACGTC ATCAGAAACG AATCCTTTGC TACGCAAATA TTACCTGGCT 
GATAGAAAGC GCACTGCCTT CGAAGCCAAG TTTAATCACA CCCCAACGTC GCGGCTTAGT 
GTGGATATGA CCGCCCGCTA TGCCAAAGAT GATTATAACG AGACTCAACT GGGTCTGACC 
GAATCTGAAG ACTACGGTTA TGACATCAAT CTTGGGCTGC AGCTGAATGC ACACCTATCT 
GGCTATGCCT TTGCTGGTCA GCAGTGGATC GACGCTGCAC AAGCTGGCAG TCAGGGGTTC 
TCAAGCCCTG ACTGGTTCGA CGATGTCGAA GATGAGTTTA TTAATCTGGG GGCTGGTTTC 
AACTATAGCG GGCTGCTTGA AGACAGGCTC AGCCTAGGCG GCGACTACTT ATTTGCTAAC 
TCTACCAGCA ACACGCTGGT CACCTATGAC GTTACCACGC CACAGGGGGA TTACACCTCT 
TTCAACCATA GTCTCAAACT GCATGCTAAC TACGCATTAA GCGAAGAGAT GGCGTTAAAG 
CTGGCTTACC AGTATGAGCG CTATTACGAC ACCGATTATG CGCAAATTGA TGTCAATACA 
GTTCCAGGAC TGACCACCTT AGGTAGCCTG AACCATAACT ATAACGCGCA CCAAGTGATG 
TTGTCGTTTA GCTACCAGCT GCGCTAA 

 

Protein sequence

MRFKFNLITL SLLAISGAIT GSAMAADFGV NKANTSTVNQ QVFQCKRCPQ VAGYTGTIGV 
NAAYIDSDDI HSGNAFGTDN DGADGSVDAD LHYRNTAGYK AKFQAHQLGL DNGFAHLEAG 
KSGHYKLVAD YQQLTRYRSG DARSQLWYKD GVLTPSEHTQ IQELSLQRNK AGLGLSYGQD 
FYQAYVRYEH ENKTGYQSSS IVTPRPVNFG LPVDANTDNL TAGLSLSGDS WTTNLNYFVS 
QYKNDVDALS LPYLYDVFAP APDNQAHQIS LSGQYQLNRT VMSGRLASGK MTQDDNLIQM 
SGNPLQNWDG EVDTLDGKLS VTSLLSNKLR LGGSVDYSKR DNKGSVWEFA QYEVNGISGA 
FKQNIPLDTE RRGFKLNASY RLSSDYRLQA GYDRKEMERS YGDREQTNDD GLWAKLNVRA 
MDDIKLKFKA SLDNRGGSEY QTSELTSSET NPLLRKYYLA DRKRTAFEAK FNHTPTSRLS 
VDMTARYAKD DYNETQLGLT ESEDYGYDIN LGLQLNAHLS GYAFAGQQWI DAAQAGSQGF 
SSPDWFDDVE DEFINLGAGF NYSGLLEDRL SLGGDYLFAN STSNTLVTYD VTTPQGDYTS 
FNHSLKLHAN YALSEEMALK LAYQYERYYD TDYAQIDVNT VPGLTTLGSL NHNYNAHQVM 
LSFSYQLR