Gene Sfri_3000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3000 
Symbol 
ID4279904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3602336 
End bp3603058 
Gene Length723 bp 
Protein Length240 aa 
Translation table11 
GC content42% 
IMG OID638135820 
Producthypothetical protein 
Protein accessionYP_751677 
Protein GI114564163 
COG category[S] Function unknown 
COG ID[COG3821] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTAATTT CATGGTTAGA TTCGCTAGCT TTAATTGTAT TTTTAGTCAG TTGGATCGGG 
TATGCCGGTT TTGCCCGTCG TAAAGCTAAA ACGACTAACT GTATCGCGCG AGTCATGCAT 
CAACAACGAA TTCATTGGAT GTCACAGGTG ATAGCCAAAG AGATACGTGT AGCCGAAGCG 
GCATTATTGG CTAATTTAGA ACGCAATATT GCGTTTTTTG CTTCAACAAC TTTACTGATC 
CTGGCAGGTG TGTTGACGTT ATTTTCGCAG GTTGAAAAGC TTGAAACCGT GATTGGTTCG 
ATTCCTTTTA CCACGTCTCC TAACCACGCG CTGGTACAAG TTAAGCTGGC TCTTTTAGCC 
GGGATTTTCG TGCTCGCATT TTTCCAATTT ACTTGGTCGA TGCGCCAATA TGGCTTTGTG 
AATATCATGA TCGGTGCTGC ACCATTAGAT AAAACCGGTA GCGATAAAAA TGCATTGGGC 
TATGCAAGGC AAATGGCCGT AGTGCAAGAT CAAGCTGCAC ATTCATATAA CTATGGCTTG 
CGTTCTTATT ACTACTCTAT GGCTGCATTG TGTTGGTTTA TGCATCCAGG AATGTTCATT 
TTAGCCAGTT TATTTGTGGT ATATACCTTG TACCAACGTG AATTTAATTC TAAAGCCGTG 
GTTGCTATCA CCGCTGCGCA GGCCTATTTA GAAAAGAACC CGGCCTATAT TGGTCGAGAT 
TAA
 
Protein sequence
MVISWLDSLA LIVFLVSWIG YAGFARRKAK TTNCIARVMH QQRIHWMSQV IAKEIRVAEA 
ALLANLERNI AFFASTTLLI LAGVLTLFSQ VEKLETVIGS IPFTTSPNHA LVQVKLALLA 
GIFVLAFFQF TWSMRQYGFV NIMIGAAPLD KTGSDKNALG YARQMAVVQD QAAHSYNYGL 
RSYYYSMAAL CWFMHPGMFI LASLFVVYTL YQREFNSKAV VAITAAQAYL EKNPAYIGRD