| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2967 |
|---|
| Symbol | |
|---|
| ID | 4279872 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3566760 |
|---|
| End bp | 3567767 |
|---|
| Gene Length | 1008 bp |
|---|
| Protein Length | 335 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638135787 |
|---|
| Product | CobD-related protein |
|---|
| Protein accession | YP_751645 |
|---|
| Protein GI | 114564131 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAATC AATTATTCAA TCCTCAATTA CTGAGCCAAG ACGGCGGATT GCTTCAGAGC
TGTTGTATTT TATTTTGTGC ATTAATATTA GCTCGCTTCG CGCCAATTCC CCGAGATTTA
CAGCCCCTAT TATGGTTCAA TCGTTTAGCG GTATTAATTT CCAGTAAAGT TAACCACCCA
GAGCGAGCGG TGAGCCAGCA ACTTATCGCT GGGATTTTAG CCACACTTAT TTTGATAGTA
CCTAGCGGGA TTATCGTCAG TTTCTTACTC AGCCTTGCCG CCTACCCATG GTTTTTCGAA
CTCATTATCT TGTATTTTTG TTTATGTGAT TCAGCTTTTA AACCAGTAGC AGAAAAGGTC
GTTACAGCAA TAAAAAAGGG TAATAAGCAG GACGCAAAAC AACTACTCAC CCCATGGGTA
AGCCAAAATA CTCAAGTGTT GTCTGAAGTC GGTTTAAGTA AAACCACCAT TGAGAAGTTA
TTCACCACTC CCATTTACGG CACCTTAGCA ACCATATTGT TTTTTAGTTT AGGCGGCGCC
ACCATGGCAT TAGTGGTGCG GATGTTAAGG CAATTAGAAC ATTGCTGGCC ACCGTATCAT
CCAAACTTTC ATATTTTTTC AAGTTTTGTT GGCCAATTCA ATCGGGTGAT TTTTTTCATT
CCAACCTTGT TATGGCATTG CTCGTTAGCG ATTCAGTTTG GACAACTGGG TATGAGGTCT
ATTTTTTCGC AGCCAATATC AGCTCAAGCC AATAAAAATC AGTTCAATAA TCATTACAGC
AGTTATGCGT TAGCGGCTAA GTTATTGAAA ATAGAGCTTG GTGGCCCCCA GCAATTTATC
GAAAATGGTA AGACAATTCG GGTCGATTTA CCAAAAGTAA AAGCGGGTCC CTTGCCAGAT
CATCGTTACA TAAGCCAAGC AATCACAGTG ACACAAACCG CTAACCTATT CTGGATAAGC
TTAACGTTAT TATTGCCATT AATATGGACA GGATTAAGAT TACTTTAA
|
|---|
| Protein sequence | MVNQLFNPQL LSQDGGLLQS CCILFCALIL ARFAPIPRDL QPLLWFNRLA VLISSKVNHP
ERAVSQQLIA GILATLILIV PSGIIVSFLL SLAAYPWFFE LIILYFCLCD SAFKPVAEKV
VTAIKKGNKQ DAKQLLTPWV SQNTQVLSEV GLSKTTIEKL FTTPIYGTLA TILFFSLGGA
TMALVVRMLR QLEHCWPPYH PNFHIFSSFV GQFNRVIFFI PTLLWHCSLA IQFGQLGMRS
IFSQPISAQA NKNQFNNHYS SYALAAKLLK IELGGPQQFI ENGKTIRVDL PKVKAGPLPD
HRYISQAITV TQTANLFWIS LTLLLPLIWT GLRLL
|
|---|
| |