Gene Sfri_2934 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2934 
Symbol 
ID4279839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3523279 
End bp3523896 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content45% 
IMG OID638135754 
Productanti sigma-E protein RseA domain-containing protein 
Protein accessionYP_751612 
Protein GI114564098 
COG category[T] Signal transduction mechanisms 
COG ID[COG3073] Negative regulator of sigma E activity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0136757 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTAAAT CAAGTCAAGA GTGGGTATCT GCAGCAGTTG ATGGTGAAGC CGATGATAAA 
ACATTGGCGC AGCTTTCTGC CGACGTTGAT TCACATGATG AGTGGCAACG CTATCACATG 
ATAGGCGATG CAATGCGCGG CGAGCTGCCG GCAGCCATTG ACTTAGACCT TTTCGCTAGC 
ATCACTGCAG CAATTGAGCT TGAACCGACA ATTATTATGC CTCAAGCCAA ACAAAGTGAG 
TTAGCTGAGA AAGTTAGCAC TCCACAGCAA GTTGCAGTGG GTTCAAACGT GGTGCCATTT 
TTCAAACAGT TTGGCCAATA TGCTATTGCA GCAACAGTTG CTATGGTGGC TATTGTTGGG 
GTACAAAACT ACAATCAAAC CAATGATGCT GAGTCACCGT TACCGGTATT AATGACTCGT 
CCATTAGTGG GCAGTGTGTC CCCCGTCAGC TATCAGACTG GTGCAGTACA AAATCAACAA 
AGCTATTCTA ATGAGCAAGT TATAGAACAG CGTCGCCGTA TTAATGCTTA TATCCAAGAT 
CACATGTTAC AACAACGCTT AAACCCAGGT GTTGCTGTTG ATGATAATAG CGTGCAAGAT 
GCAGCGGTAA ACCCATAA
 
Protein sequence
MLKSSQEWVS AAVDGEADDK TLAQLSADVD SHDEWQRYHM IGDAMRGELP AAIDLDLFAS 
ITAAIELEPT IIMPQAKQSE LAEKVSTPQQ VAVGSNVVPF FKQFGQYAIA ATVAMVAIVG 
VQNYNQTNDA ESPLPVLMTR PLVGSVSPVS YQTGAVQNQQ SYSNEQVIEQ RRRINAYIQD 
HMLQQRLNPG VAVDDNSVQD AAVNP