| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2887 |
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| Symbol | ispH |
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| ID | 4279792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3471047 |
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| End bp | 3472006 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638135707 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_751565 |
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| Protein GI | 114564051 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0462769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTAAAAG TTGATCCGAC GTCTCCAGAA CTGAGTATTT TACTGGCCAA TCCTCGGGGT
TTCTGTGCCG GGGTAGATCG CGCTATCAGT ATTGTTGAGC GTGCTTTAGA GTTATTTGAA
CCTCCAATTT ATGTACGCCA TGAAGTGGTA CATAACCGAT ATGTGGTTGA AAATCTAAAA
CAGCGTGGTG CTCTTTTTAT TGATGAACTT GACCAAGTAC CAGACAACAG CATTGTTATT
TTTAGTGCGC ACGGTGTATC ACAAGCTGTG CGCAAAGAAG CTAAAAACCG TGGTTTAAAA
GTCTTTGATG CGACATGTCC GTTAGTGACA AAAGTACATT TACAAGTGAC TCGTGCAAGT
CGCAAAGGTA TCGAGTGCAT TTTGATTGGT CATGAAGGCC ATCCAGAAGT TGAAGGCACC
ATGGGACAAT ATGATAATCC TAAAGGTGGT GTTTATCTTA TTGAGTCTCC AGAGGATGTT
AATAATCTTC AGGTTAATAA CCCAGACAAC TTATGTTTTG TCACTCAAAC AACGCTTTCT
GTTGATGATA CCTTAGATAT TATTACTGCA TTGCAAAAGC GCTTTCCTTC AATTGAGGGG
CCGCGTAAAG ATGATATTTG CTACGCGACG CAAAATCGAC AAGATGCTGT ACGCAGTATG
TCTTCCGAAG TTGATTTATT GATTGTTGTT GGTTCTAAAA ATAGCTCTAA CTCAAATCGT
TTACGTGAAC TGGCTGAGAA AACGGGTACG CAATCTTATC TCGTTGATAC CGCCGCTGAC
GTGGAGGCTA TGTGGTTTGA TGGTGTGAAG AAAGTCGCTG TAACTGCAGG GGCTTCAGCC
CCAGAGGTTT TAGTACAACA AGTTGTTAAC GCAATAGCTA AACTTGCCCC AAGTATTATT
ACTGAAGTTG AAGGCCGTAA AGAAGACACT GTATTTGCGG TTCCTGCTGA ATTACGTTAA
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| Protein sequence | MLKVDPTSPE LSILLANPRG FCAGVDRAIS IVERALELFE PPIYVRHEVV HNRYVVENLK
QRGALFIDEL DQVPDNSIVI FSAHGVSQAV RKEAKNRGLK VFDATCPLVT KVHLQVTRAS
RKGIECILIG HEGHPEVEGT MGQYDNPKGG VYLIESPEDV NNLQVNNPDN LCFVTQTTLS
VDDTLDIITA LQKRFPSIEG PRKDDICYAT QNRQDAVRSM SSEVDLLIVV GSKNSSNSNR
LRELAEKTGT QSYLVDTAAD VEAMWFDGVK KVAVTAGASA PEVLVQQVVN AIAKLAPSII
TEVEGRKEDT VFAVPAELR
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