| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2725 |
|---|
| Symbol | |
|---|
| ID | 4279631 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3277535 |
|---|
| End bp | 3279451 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638135544 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_751404 |
|---|
| Protein GI | 114563890 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0122187 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAGT TAGGACTATC AATGCACGCA CAATCGATAG CCGAGCCTGA AGTATTTTGG
CAACAAGCGG CAAAATCCAT TCATTGGGAT GTTGCGCCAA AAAAGGTATT AGATGACAGC
GACAAACCGT TTTATCGTTG GTTTGCTGAT GGTAAGATGA ACACCTGCTT CAATGCCGTT
GATCGCCATG TATTAGCTGG GCGAGGCGAG CAAACTGCAA TTCACTATAT TAGTCCTGTG
ACGCACAACG AATACTCTAT TAGCTATCAA TCTGTGTTGG CTCAAGTTAA ACGCTTGGCT
GGATTGATGG TGTCTCTTGG CGTCGAAAAA GGCGACCGAG TGGTTATTTA TATGCCAATG
GTGCCAGAAA CCGCCTATGC CATGCTGGCA TGTGCACGGA TTGGTGCAAT TCATTCTGTG
GTATTTGGTG GTTTTGCCGC CAATGAGCTT TCTACGCGTA TTAACGATGC AAAACCCAAG
TTAATTCTGT CTGCTTCATG CGGTATTGAG CCTTCTGGTG TCGTACCGTA CAAGCCTTTA
CTCGATGACG CATTATCTCA AGCACAACAT CAAGTCGATC ACTGCATTAT TTTAAATCGT
ACTGAATATC AAGCACAACT ACAGTCACCA AGAGATCTGG ATTGGTACAA TTCACTGGTG
GGTGCGCCTG ACGCTGATTG CGTGTCGCTC GATGCGACCG ATCCTTTATA TGTTTTATAT
ACCTCTGGTA CCACTGGTCA ACCTAAAGGT GTAGTACGTG ATAATGGTGG CCATGCAGTC
GCATTAGCAT GGTCGATGAA ACACATTTAT GACATTGGTG TTGGCGATGT TTTTTGGGCG
GCATCTGATG TTGGCTGGGT GGTAGGGCAT TCATATATTG TTTATGGGCC ATTGCTTGTG
GGTGCGACGA CCATAATGTA CGAAGGTAAG CCTATTGGTA CGCCTGATGC GGGTGCATTT
TGGCGTATTA TCGAACAAAA AAATGTTCGT AGCTTTTTTA CCGCCCCCAC CGCTATTCGT
GCCATAAAAC GAGAAGATCC TGACGGCGAG TTTATTAAAC AATTTGATTT AACTTGTCTG
AAGCAAATGT ATTTAGCGGG GGAGCGTTGC GATCCTGACA CCTTAAATTG GAGTCAGCAG
CAGTTAGGTA AACCTGTAAT TGATCATTGG TGGCAAACCG AAACCGGTTG GCCAGTCGCG
GCAAATTTGA TGGGCACCGA TCCGATAGAG ATTAAAGCCG GATCGCCTGC GCGCGCAGTA
CCTGGATACC AAGTGGAGAT TCTTGATGCG ATGGGGCAAC AAGTGGCTCC TAATGAAAGT
GGTAATGTGG TGATAAAGCA ACCTTTACCA CCAGGCACAT TAACGACTTT GTGGCAAAAT
GATAAACGCT ATATCGACAG TTACTTGTCT ATGTATCCTG GTTATTACTT AACTGGAGAT
GCGGGTTATG TCGATGAAGA TGGTTATTTA TACATTATGA GCCGAATTGA CGACATCATA
AATGTTGCCG GACACCGTTT ATCTACGGGT CGATTTGAAG AAGTTTTATG TCAGCATGAA
GCGGTGGCCG AGGCTGCGGT AATTGGTGTG CAAGATAAAC TAAAAGGCCA GGTGCCTCTT
GGATTAGTCG TGCTTAAAAA TGGCGTTACC TTGTCAGATG AAGCTCTTTA TAAAGAGTTA
CTTGCCTTGG TACGTCATGA AATTGGCCCA GTGGCTTCAT TTAGGCTAGT CAGTGCTGTG
CAAAAGTTGC CTAAAACTCG CTCTGGAAAA ATATTACGCG CCACAATGCG TAAAATTGCT
GACAATCAAG AGTACACCAT GCCAGCAACG ATTGAAGACC CACAAACCTT GGATATTGTT
CGCAATGCGC TGACTAGAAT GGGTTATGCT AATGCACTAA CTACTGAGTT AACATGA
|
|---|
| Protein sequence | MAELGLSMHA QSIAEPEVFW QQAAKSIHWD VAPKKVLDDS DKPFYRWFAD GKMNTCFNAV
DRHVLAGRGE QTAIHYISPV THNEYSISYQ SVLAQVKRLA GLMVSLGVEK GDRVVIYMPM
VPETAYAMLA CARIGAIHSV VFGGFAANEL STRINDAKPK LILSASCGIE PSGVVPYKPL
LDDALSQAQH QVDHCIILNR TEYQAQLQSP RDLDWYNSLV GAPDADCVSL DATDPLYVLY
TSGTTGQPKG VVRDNGGHAV ALAWSMKHIY DIGVGDVFWA ASDVGWVVGH SYIVYGPLLV
GATTIMYEGK PIGTPDAGAF WRIIEQKNVR SFFTAPTAIR AIKREDPDGE FIKQFDLTCL
KQMYLAGERC DPDTLNWSQQ QLGKPVIDHW WQTETGWPVA ANLMGTDPIE IKAGSPARAV
PGYQVEILDA MGQQVAPNES GNVVIKQPLP PGTLTTLWQN DKRYIDSYLS MYPGYYLTGD
AGYVDEDGYL YIMSRIDDII NVAGHRLSTG RFEEVLCQHE AVAEAAVIGV QDKLKGQVPL
GLVVLKNGVT LSDEALYKEL LALVRHEIGP VASFRLVSAV QKLPKTRSGK ILRATMRKIA
DNQEYTMPAT IEDPQTLDIV RNALTRMGYA NALTTELT
|
|---|
| |