| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2529 |
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| Symbol | |
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| ID | 4279438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3022888 |
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| End bp | 3024816 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135324 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_751210 |
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| Protein GI | 114563697 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAACA CTTGGGCGAA CACTTTAATT ACAGGCGCAT TATTATTCAG CACATCATTG
GCCTTTATTG GCCAAGCTAA TGCGCTGACT TCACAACAGC AACGCTATCT TGATGCCCGC
CAAGCTCTGG ATAAAAAGCA GCTCGACAAG TATCAAGCCC TACGCAACCA ACTCGGCGAC
TATCCATTAA CGGTTTACCT TGATTACCAC GCCAAAATCG ACAGCATAGT GCAATCTTCT
GGCGACAAAG CGCTCAATGC CATCAACCAA TTTGATACCA CACCGCTTTA CAACAATGCG
CGTTATCGCT ACCTGCTCAA TGCTGGTAAA AAACAACGTT GGCAAGACTT TCTAGTGATA
GCGCCAGACA CACCTAACGA TGTGCGCTTA CAGTGTTATT ACTACCAAGC TCAACTTGAT
GCTGGTAACG AAACCATGGC TTACAAAGGC ATAGAACGTT TATGGGTTCA TGGCTATTCA
CGTCCCAATG AATGCGATGC GGTGATAAAC CAATGGACTA AAGCGGGCTA TCGCACCCAA
GAGCTCATTT GGGCGCGGAT GTTGCTCAGC TTTAATGCTA GGCAATCCAG TTTGCTGAGT
TATTTATCGC AAAAAGTTAC CCAACACAAT AATGAAGCCA AACTACTATT GTCGGTGTAT
CGCGATCCTA ATATTTTGCG TCACATGAAC AAGTTTTCCA GCTCTAAACC CATAGTGGGT
GATATTGTTG ATGCAGGCTT ACGTAAGCTA GCGCAAAAGG ATTTACATCA AGCGATTAAA
TTGTATGTTA AATATCAAAA GGCCAACCGT TTCAGCGATC TTGAAGCGCG CCAGCTCAAT
CGCTATTTAG TACGCCGAGC GCTAATTAAG CAAGACGATA AATTGGTGGC GCATATTGAT
ACCATGCTGC CATTACTAAA ATCTGATGAC TTATACGAAA TGCGCCTACG TTGGGCTATT
CGTGAACAAG ACTTCAGCAC GGTAGAAAAG TATTTAGCGT TATTGAGCGA TCAAGGTAAA
GCTGATTCTC GCTGGCAATA TTGGCAAGCT AAAATGACCT CTCGTCATGA CAAAAACCGC
GCGACGCAAT TACAGTCGAC CTTAAGTGGC GAGCGTAATT TTTACGGTTT TAATGCGGCT
GAAGCATTAG GCAAACCTCT GGCGATGAAC GACGACAATT TAACCCCTAA TCCTGAGCTG
CAAGCAACAT TAAACCAAGA CCCTGGTTTA GCGCGCGTTG TGGAATTAAT GGCCTTAGAT
AAGCAAATTG ATGCTCGTAA CGAATGGCTG TATTTAATGC GCCGCCACAA CAGTGAAATG
ACCGCTCAAT ATGGTCTATT AGCTTTAAAA AATGGCTGGC ATGCATTTAG TGTTGAATCC
AGTATTCAAG GTAAGTTATG GGATTCAATA GCACTGCGTT TTCCTGAAGC GGCTAACGAT
GAGTTCCTCA AAGCCAGTAA AAAGTTTTCG GTAGACATTG ATGAAATCCG CGCTATTTCT
CGTCGAGAAA GTGCGTTTTA TCTGTATGCC ACCTCTGGTG TGGGGGCTAG AGGCTTAATG
CAATTGATGC CCGCTACAGC CAAACAAACC GCCAAAAAGA ACAAAATACC TTTTAATAAC
GTAAAAGACC TGTACGACCC GAAAGTGAAC ATTATGTTAG GCAGTGCCTA TTACAGTGAA
TTACTTAAGC AGTTTGGTCA AAACCGCGTG TTAGCAACAG CAGCTTATAA TGCCGGTCCA
GGTAGTGTTA GGCGCTGGTT AAGACAGTCT AATGGCAGCT TAGATGTAAT GAGTTTTATT
GAAACGATTC CTTACACCGA AACTCGCGAA TACGTTCAAG CAGTACTAAG TTACCGAATG
ATATTCCAAC AACAAAAATC ATTAAATGAA GGTATGTTTA GTGCAAAAGA GCTCAGCTAC
CTTTATTAA
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| Protein sequence | MRNTWANTLI TGALLFSTSL AFIGQANALT SQQQRYLDAR QALDKKQLDK YQALRNQLGD
YPLTVYLDYH AKIDSIVQSS GDKALNAINQ FDTTPLYNNA RYRYLLNAGK KQRWQDFLVI
APDTPNDVRL QCYYYQAQLD AGNETMAYKG IERLWVHGYS RPNECDAVIN QWTKAGYRTQ
ELIWARMLLS FNARQSSLLS YLSQKVTQHN NEAKLLLSVY RDPNILRHMN KFSSSKPIVG
DIVDAGLRKL AQKDLHQAIK LYVKYQKANR FSDLEARQLN RYLVRRALIK QDDKLVAHID
TMLPLLKSDD LYEMRLRWAI REQDFSTVEK YLALLSDQGK ADSRWQYWQA KMTSRHDKNR
ATQLQSTLSG ERNFYGFNAA EALGKPLAMN DDNLTPNPEL QATLNQDPGL ARVVELMALD
KQIDARNEWL YLMRRHNSEM TAQYGLLALK NGWHAFSVES SIQGKLWDSI ALRFPEAAND
EFLKASKKFS VDIDEIRAIS RRESAFYLYA TSGVGARGLM QLMPATAKQT AKKNKIPFNN
VKDLYDPKVN IMLGSAYYSE LLKQFGQNRV LATAAYNAGP GSVRRWLRQS NGSLDVMSFI
ETIPYTETRE YVQAVLSYRM IFQQQKSLNE GMFSAKELSY LY
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