Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2480 |
Symbol | |
ID | 4279391 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 2963473 |
End bp | 2965935 |
Gene Length | 2463 bp |
Protein Length | 820 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 638135276 |
Product | Ig domain-containing protein |
Protein accession | YP_751163 |
Protein GI | 114563650 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.311981 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGGTCAG CATATAAAGT TTATTTCGCG CTTTTATGTT CTTTTTTTCT CGTCGCATGT GGCGGCGGTG GCAGTATAAC CGATGATGGA ACCGGAGGTG GGACTACACC AGACCCAACC ATATCTATTT CATTAAGTAT CGACAACGAT CAAGTTTCTG TTGCTGAACC TGCAGTTATT ACTGCAACAG TGAAAGACTC AACGGGTGCA GCTGTCAGCA CGCTTGTTTC ATTTACGCTT AATAATGATG ATTACGGTAC ATTTTCACCA AGTACCGGTG AAGTTGTCAC CAATTCAAGC GGTGTTGCTA CTATCCAACT CAATACCGCA GAAATTAATA CTGGAGCAAC AGTAACCGCG ACTACCACGT CAGGTGAAAG TGCAGCATTA TTTGTCACTA TGACGGGTGA TGGCGGTGTT GCAGGCGGTG GTGCTCAAGT GTCATTGGTA TTAACTGATG CAGCTGGAAA CGCTATTCAA TCGATTAGCA CTTTATCACC AGGTAAATTA ACTGCAACAG TTACAGGTAT TACTAGGTCC TCTATTGTTA CATTTGAAAG CCCTATCGGT GATTTACCCG TTAAAACTGC AGTAACTAAT GCACAAGGTA AAGCTACCGT TGATATTTAT GCAGGTAGCT CGCTAGGTGC CGGTGAAGCA ACAGCGACAT TATCAACCAA TGAAACCGGT TCAACTATTG TTGTTGTCGG AGCTACCAAC GTTGTGATGG GCAGTGGTAC ACCATTTGTT GAAGGTGTCG CTGCTATTAG TGCTACTGAT TTATCCGCGG GTGGAACAGC GACTGTAACC GTGTCGATTC AAGATGATTT AGGTAATGCT TTTACACAAC CTGTGGACGT AAATTTTTCA TCTACTTGTG CTACTAAAAT TCCTGCGCAA GCAGTGATAA GCTCACCAGT ATCGTCAAGT AATGGTGTCG CAACCTCAAC GTATCGTGCT GAAGGTTGTG TGGGTGAAGA CCAAATTAAT GTGACTGCCA ATGCTGGTGG CATCAGTTTA TCTGCAGTAG GTACCATCAA TATACTTCAG GCTGACGTTG GCAGTATTGT GTTTGTTTCA GCAGTACCAG AGAACATCAG TATTTTAGGG ACTGGCGGCA CTGAGTCATC TGTAGTTAAA TTTAAAGTTT TGGATAAAAA TGGCAATGTG GTAGCTAACC AAAATGTTAA ATTTGCACTA AATACTACTG TAGGTGGGGT TAAAATTGAT CCCCTGCAAG CTACTACAGA TAATAGTGGT ATTGTGCAAA CGGTAGTAAC CACAGGTACA GTAGCGACTT CTTTACGTGT GACTGCAACG GTAGACAATG GTGCAATTCC GACAATATCG AGTCAGTCTA GCCAGCTAAT TGTGTCTACG GGTATTCCAG ATCAAGATAG TTTCTCATTA GCTGCAACGA TATTAAATCC AGAAGGCTGG AATGTTGACG GTACAGAAGT GACGGTTACT GCACGTATGG CTGATGCATT TAACAACCCT GTACCCGATG GGACAACGGT ATCTTTTACC ACTGAGGGGG GGTCTATTGA AGATGCCTGT CAAACACTTA ATGGTGCATG TTCTGTAGTG TGGACGAGTC AACTACCAAG ACCAGAAGGT CAGATAATTC TGAATGGCGC CGGTCAGATG TATCGTAATC CTAATGCTGC ATTAGCTTAT GATGCCACTT TAGATCTTTA TGGAAATATC TATGGCCAAA AATACGGTGG ACGTGCAACC GTTACAGCCA CTGCAATTGG TGAAGAGTCT TTTCCAGATT TAAATGGTAA TGGTCGTTTT GATGCATCAG AAGCAAATAC GTTTCTTACG GGGACAGATG TGACTGGTCA GTCATTTGAT TTAAATGATG CATATAATGA CTATAATGAA GATGGCCTCT TTAATCCGCA ACAAACCGGT GGTCAAGCTG GTGGCACATT AGAAGAGTTA ATCGATTTTA ACTCCAATGG TATATTTGAT GTAAAAGACG GTAAATATAA TGGTGTGCTT TGTTCTGACC CTGTGCACAG TGCATGTGCT GATGGCGTAA GTGATTCAAA GTCATTATTT GTTCGCAGAA GCTTAACATT AGTGATGTCT GGAAGTACTG CGTATGCTAC TGCTCCCGCT GATATTGTAG TTGACGATAG CACTGGCATT CATTCTGGTG CAAGCAGTAT GGTTATTGTG GGTAAAGGCT CTGCAACTGC AACATTTACG ATTTCAGATT TGCATAATCA ACAAATGCCA GCAGGTTCGA TCGTAAGATT TACCACGTCA GCGGGCTCGG TGGTGAGTTC AAGCGAATAT ACATGGCCAA GTACCAACTA CAATGGTGGT CGTCAGTTTA CAACAACTAT TAAAGGCGAA GATGAGCCGA ACTCTGGTGT CTTCCTTGTA GAAGTAGAAT CACCAAATGG TTTAGTCACT CCAGTGGTAT CCATTGGTGT AACAATTCTA TAA
|
Protein sequence | MRSAYKVYFA LLCSFFLVAC GGGGSITDDG TGGGTTPDPT ISISLSIDND QVSVAEPAVI TATVKDSTGA AVSTLVSFTL NNDDYGTFSP STGEVVTNSS GVATIQLNTA EINTGATVTA TTTSGESAAL FVTMTGDGGV AGGGAQVSLV LTDAAGNAIQ SISTLSPGKL TATVTGITRS SIVTFESPIG DLPVKTAVTN AQGKATVDIY AGSSLGAGEA TATLSTNETG STIVVVGATN VVMGSGTPFV EGVAAISATD LSAGGTATVT VSIQDDLGNA FTQPVDVNFS STCATKIPAQ AVISSPVSSS NGVATSTYRA EGCVGEDQIN VTANAGGISL SAVGTINILQ ADVGSIVFVS AVPENISILG TGGTESSVVK FKVLDKNGNV VANQNVKFAL NTTVGGVKID PLQATTDNSG IVQTVVTTGT VATSLRVTAT VDNGAIPTIS SQSSQLIVST GIPDQDSFSL AATILNPEGW NVDGTEVTVT ARMADAFNNP VPDGTTVSFT TEGGSIEDAC QTLNGACSVV WTSQLPRPEG QIILNGAGQM YRNPNAALAY DATLDLYGNI YGQKYGGRAT VTATAIGEES FPDLNGNGRF DASEANTFLT GTDVTGQSFD LNDAYNDYNE DGLFNPQQTG GQAGGTLEEL IDFNSNGIFD VKDGKYNGVL CSDPVHSACA DGVSDSKSLF VRRSLTLVMS GSTAYATAPA DIVVDDSTGI HSGASSMVIV GKGSATATFT ISDLHNQQMP AGSIVRFTTS AGSVVSSSEY TWPSTNYNGG RQFTTTIKGE DEPNSGVFLV EVESPNGLVT PVVSIGVTIL
|
| |