| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2258 |
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| Symbol | |
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| ID | 4279170 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 2704610 |
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| End bp | 2705317 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638135055 |
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| Product | pseudouridine synthase, Rsu |
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| Protein accession | YP_750942 |
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| Protein GI | 114563429 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAAAA TCGGTAAATT CAGTTCATTT AAAAAAACAT CTACTTACAG AACTGGCGCG
TCAACAACAT CAGTCAATTC TGAAGCAACA AGAGCACCAA TCAGTAGTGC TGCTAATCGG
AGCAGGGCAA AATCGCGTCC CCCACAAAAA CCACGGCCTG AAAATCCCGT CATTGTATTA
TTCAACAAGC CATTTGACGT GTTGTGCCAA TTTACCGATG AAGCAGGCCG ACAAACATTA
AAAGACTTTA TTCCTGTAGC CGATGTCTAC GCAGCAGGAC GTTTAGACCG TGATAGTGAA
GGATTGCTAT TGCTTACCAA CGACGGACAA TTGCAGGCAA AGCTTACCCA ACCATCGCAA
AAAACCTTTA AAACCTATTG GGTTCAGGTG GAAGGCGAAC CGTCGGATGA AGCAATCAAT
GCCTTATGTA ATGGGGTTGG ATTAAAAGAC GGTATGACAT TACCGGCTAA AGTTTGCGTA
ATGGCATCTC CTGATATTTG GCCAAGAACC CCGCCAGTAC GAGAACGTAA AGCCATTCCA
ACGACCTGGC TTGAAGTGCA AATTTGTGAA GGTCGAAATC GCCAAGTCAG AAGAATGACC
GCACATGTGG GTCATCCAAC CTTAAGATTA ATCCGTTATA AAATAGGTCA ATGGTGTCTA
GATGATTTAC CTAATGGTGA ATACAAAGTG ATCAGCACGG CAAAGTAA
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| Protein sequence | MSKIGKFSSF KKTSTYRTGA STTSVNSEAT RAPISSAANR SRAKSRPPQK PRPENPVIVL
FNKPFDVLCQ FTDEAGRQTL KDFIPVADVY AAGRLDRDSE GLLLLTNDGQ LQAKLTQPSQ
KTFKTYWVQV EGEPSDEAIN ALCNGVGLKD GMTLPAKVCV MASPDIWPRT PPVRERKAIP
TTWLEVQICE GRNRQVRRMT AHVGHPTLRL IRYKIGQWCL DDLPNGEYKV ISTAK
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