| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2238 |
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| Symbol | |
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| ID | 4279150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 2683900 |
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| End bp | 2684226 |
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| Gene Length | 327 bp |
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| Protein Length | 108 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638135035 |
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| Product | type IV pilus biogenesis protein pilZ |
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| Protein accession | YP_750922 |
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| Protein GI | 114563409 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3215] Tfp pilus assembly protein PilZ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTCGATC TTGTTGTTAA TTACGATACA TTACACAAAC TTTACCGTGC TTATATGCCT
TTTATTAAGC CTGCAGGTTT ATTCGTGGCG ACTACAGAAA GTCATTTCTT AGGCCAAGAG
CTTACCATTG CTTATCGATT GCCTAATGCC ACTCAAACTA ATGAATTTAA AGGCTCTGTG
GTATGGATTA ACCCATTAGG CGCATCCGGT GGGCGCCCAG CAGGTATTGG GGTTAAAATT
AAAACTGATG TTGAAAGTCA TAAACATCAT ATTGAAAAGT TATTATCAAG CGAACTTGCC
TCTAGCGATT TGACCTGCAC TATGTAG
|
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| Protein sequence | MVDLVVNYDT LHKLYRAYMP FIKPAGLFVA TTESHFLGQE LTIAYRLPNA TQTNEFKGSV
VWINPLGASG GRPAGIGVKI KTDVESHKHH IEKLLSSELA SSDLTCTM
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