Gene Sfri_2220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2220 
Symbol 
ID4279132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2654923 
End bp2655942 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content41% 
IMG OID638135017 
Productdihydroorotate dehydrogenase 2 
Protein accessionYP_750904 
Protein GI114563391 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0167] Dihydroorotate dehydrogenase 
TIGRFAM ID[TIGR01036] dihydroorotate dehydrogenase, subfamily 2 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTTACA AACTCGCGCA AAAAGTAATG TTTCAGATGG ACCCTGAGTT AGCCCACAAT 
ATCGCGATTG GCAGTTTGAA AATGACCGGA AACAATTTGT TGAATTGTTT TTATCGTCAA 
CAGGTTAAAT CTTCCCCAGT AACCTGTATG GGACTGACGT TCCCCAATCC TGTCGGTTTA 
GCAGCAGGAT TAGATAAAGA CGGCGAGTCA ATTGATGCTT TTCATGCGAT GGGTTTTGGC 
CATGTTGAAG TAGGAACAGT AACACCACGC CCGCAAGCTG GTAACGATCA ACCTCGTTTA 
TTTCGATTAA AACCTGCCAA AGGCATTATT AATCGTATGG GCTTTAATAA TAAAGGTGTC 
GATAATCTGG TTCGTAATTT AATGGCCAAA AAGTCTGACA TTATGGTTGG CGTGAACATA 
GGTAAAAATA AAGACACTCC AGTAGAGCAG GGTAAAGATG ACTACCTAAT TTGTATGGAA 
AAGGTTTATC AATATGCGAG CTATATTGCA GTTAATATTT CCTCTCCTAA CACTCCTGGT 
TTACGTTCAA TGCAATACGG TGAGTTACTT GATGACTTAC TTAGCTCAAT TAAAGCCAAA 
CAAACTGAAT TAGCCGCTAA ACATGGTAAA TATGTCCCTG TTGCGCTAAA AATTGCTCCT 
GATTTAACCT CAGAAGAAAT CAGCGCGATA GCTGACTCAT TGATGAGTAA TCAGTTTGAT 
GGTGTTATCG CGACCAACAC CACCTTAAGC CGAGATACTG TTACTGATTT AAAACATGCC 
GAAGAAATGG GTGGCTTAAG TGGCAAACCA TTGGCTGATT TATCAACACA AGTGATCAAA 
CAATTAGCGA TCTGCTTACA AGGCAAGATC CCGATCATTG GTGTGGGTGG GATCAATAGT 
GCAGCTGATG CTTTGGCTAA ATTTGACGCT GGCTCAACCA TGGTGCAGAT TTACTCTGGT 
TTTATCTACC AAGGACCTAA ACTGGTTGAT CAGATCGCTA GAGCTTATTG TGCAAAATAA
 
Protein sequence
MFYKLAQKVM FQMDPELAHN IAIGSLKMTG NNLLNCFYRQ QVKSSPVTCM GLTFPNPVGL 
AAGLDKDGES IDAFHAMGFG HVEVGTVTPR PQAGNDQPRL FRLKPAKGII NRMGFNNKGV 
DNLVRNLMAK KSDIMVGVNI GKNKDTPVEQ GKDDYLICME KVYQYASYIA VNISSPNTPG 
LRSMQYGELL DDLLSSIKAK QTELAAKHGK YVPVALKIAP DLTSEEISAI ADSLMSNQFD 
GVIATNTTLS RDTVTDLKHA EEMGGLSGKP LADLSTQVIK QLAICLQGKI PIIGVGGINS 
AADALAKFDA GSTMVQIYSG FIYQGPKLVD QIARAYCAK