| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1998 |
|---|
| Symbol | |
|---|
| ID | 4278910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 2369410 |
|---|
| End bp | 2371263 |
|---|
| Gene Length | 1854 bp |
|---|
| Protein Length | 617 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638134785 |
|---|
| Product | histidine kinase |
|---|
| Protein accession | YP_750682 |
|---|
| Protein GI | 114563169 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3221] ABC-type phosphate/phosphonate transport system, periplasmic component
[COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAATTG AAACTTTGCT GATTGGAGCA CTTTCATTAA TTCTTGCTGG ATATTTAACT
CAAGCAAGTG CGCAGCCTGT AACACCTGAT GCGGACATTG AAAAACCCAT TACGACTCAA
ACTGAAGTAC ATTACCGAGT TGCAGTGCTT GCCAATTATG GTGTGGCTAA AAGTATTGAA
CGCTGGCAGC CATTAATGGA CTATTTAAGC CAAAATGTTG CCAATGCCAG CTTTGAAGTT
GTGCCGTTAG ACTTCAACAA CATGAATCAA AAGCTAATCA GTGGCGACAT ACAGTTTGTT
GTCACCAATC CTGGCCATTA CTTTAATATG AGTGGCGACT ATCCAATTTC CTGGTTGGCA
ACCATGAAGA GCAATCAACA TAATGGCAGC ACCTTTGCGA TAGGTGCGAC TATTATCGTC
CGTAAAGACA GTCATTTGTT TAGTGTAGAA GATCTTGCTG GTCATTCCGT GGTGGCCAGT
GATCCTAATG CATTAGGAGG GTACCAAGCC GCGATAGGGC TAATTCATTC AATGGATTAT
TCGATCAATA ACTTCTTTTC CAAAGTGACG TTTCTCGGTT TTCCTCTTGA ACCGCTTATT
TATCAAGTCC GCGATGGCAC AGCTGATATA GCCATTACTC CATTTTGTAC TTTAGAACAG
ATGGTTGCAG AGGGTTATAT CGAGGCTAGC GATTATCGTG TAATAAATGA TGTCACTCCA
GCTGATTATG AATGTGCTGT AAGCACCCCT TTATATCCGA ATTGGTCGTT TGCATCGTCG
GATGCGGTGC CGTTAATGGT GAGAACGGGG ATCACTCGGG CATTACTGTC GATAAGTATG
GATGACCCAG CGTCAATCAT CGGACAAAAT CGAGGCTGGG CAGCTCCCAT TAGTCAGTTT
CAAGTGGTTA AATTGTTTAA TGACCTTAAC TTAAATGCAG ATGATAGCCC TGTGCATCTA
CAGGTGTTGC AATGGATAAA GCTTAATCAA AAATGGGGCT TTAGTTTATT GGGTTTATTT
GTTATCGCGA CCATATATCA TCTTTGGTTG GAATATAAAT TTAGACAAAA GAGCGAGTTC
TTAATCAATA CAGAGCGCCA ATTGAAAAAT AAAGCATTGC AGCTTGAGCG CATGCAAAGC
GCAGCAATTT TAGGTGAAAT AGGAGCCGGT TTAGCTCACG AACTCAATCA ACCCATTGCG
GCCATTACAC AATATAGTGA AGGCGGTATG ATTGAGCAGG CAAAAAATAT TGGTACAAAC
TCAGTACAAT ACCAATTACT TGAAAAAATA CACCAGCAGT CAATGCGTGC AGGAGAAATC
GTTCATAGGA TCAGAGAATT GTTGCAACGA AAAGGTACTG CAAGTACTGA GTTTGATGTA
CAAGAACAAT TAATGATTTG CCTAGACTTA CTAGAGCATG AGTTCGAAAA AGAAAAAATC
AACATCAAAA CTCAATTGAC TACCACTGAA ATTAAGCTAA ATGGTGATAA AGTTGGTTTT
TGTCAGGTGT TGATTAACGT GTTAAAAAAT GCCATTGATG CAGTGTCTGA AAAAGAGTTT
CCACTTCATA GCCGCAAACG GATATTGATA GATTTACACA TTGTTGATCA AAGTTTACAG
CTGAAAATTT ATGATAATGG TATTGGGTTA ACCTGTGCCA ACGATGATTT TAAAACAAGT
TTCTTTTCTA CCAAAGCCAA TGGCTTAGGG CTAGGACTGG CTATTTGTAG TGATGTTATT
GCGCTTTTTG GTGGCCAGAT AAACTTATCA AAATGCAAAG ATGACCCAAG CCCACCGTGG
CGATATGGAT GTAGGGTTCT CATTGTTATC CCATTAAATG CTATGCCCGA TTAA
|
|---|
| Protein sequence | MRIETLLIGA LSLILAGYLT QASAQPVTPD ADIEKPITTQ TEVHYRVAVL ANYGVAKSIE
RWQPLMDYLS QNVANASFEV VPLDFNNMNQ KLISGDIQFV VTNPGHYFNM SGDYPISWLA
TMKSNQHNGS TFAIGATIIV RKDSHLFSVE DLAGHSVVAS DPNALGGYQA AIGLIHSMDY
SINNFFSKVT FLGFPLEPLI YQVRDGTADI AITPFCTLEQ MVAEGYIEAS DYRVINDVTP
ADYECAVSTP LYPNWSFASS DAVPLMVRTG ITRALLSISM DDPASIIGQN RGWAAPISQF
QVVKLFNDLN LNADDSPVHL QVLQWIKLNQ KWGFSLLGLF VIATIYHLWL EYKFRQKSEF
LINTERQLKN KALQLERMQS AAILGEIGAG LAHELNQPIA AITQYSEGGM IEQAKNIGTN
SVQYQLLEKI HQQSMRAGEI VHRIRELLQR KGTASTEFDV QEQLMICLDL LEHEFEKEKI
NIKTQLTTTE IKLNGDKVGF CQVLINVLKN AIDAVSEKEF PLHSRKRILI DLHIVDQSLQ
LKIYDNGIGL TCANDDFKTS FFSTKANGLG LGLAICSDVI ALFGGQINLS KCKDDPSPPW
RYGCRVLIVI PLNAMPD
|
|---|
| |