| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1891 |
|---|
| Symbol | |
|---|
| ID | 4278803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2237719 |
|---|
| End bp | 2238573 |
|---|
| Gene Length | 855 bp |
|---|
| Protein Length | 284 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638134675 |
|---|
| Product | DNA-binding transcriptional regulator HexR |
|---|
| Protein accession | YP_750575 |
|---|
| Protein GI | 114563062 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1737] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATACCC TTGAAAAGGT TCAAAAAAGC CTTACCCAAT TTAGTAAATC GGAACGTAAA
GTTGCCGAAG TCATATTAGC CTCACCGCAA ACAGCTATAC ATTCAAGTAT TGCCACATTA
GCAAAGATGG CTGATGTTAG TGAACCAACG GTTAACCGAT TTTGTCGTCG ATTAGACACA
AAGGGTTTCC CTGATTTTAA GTTACATTTG GCTCAAAGTC TTGCTAACGG CACACCTTAT
GTTAGTCGCC ACGTTGAAGA AGATGACACG CCAGAGTCAT ACACGACAAA AATCTTCGAA
TCTTCAATGG CATCGCTCGA TACTGCCCGT CAAAGTTTAG ATACATCAGC GATAAATAAA
GCGGTCGATA TTCTCACTCA AGCTAAGACT ATTTCGTTTT TTGGCCTTGG CGCATCAGCA
TCTGTAGCCC ACGATGCGCA AAACAAGTTC TTCCGTTTTA ATGTACCAGT GATATGTTTC
GATGATGTGT TAATGCAGCG TATGAGCTGT ATTAACTGTA ATGAAGGTGA CGTGGTCGTA
TTGATTTCGC ATACAGGTCG CACTAAATCA CTGATTGAAA TTGCCCGTAT TGCGCGTGAA
AATGGCGCTG CCGTGATTGG CATTACCGCC CGAAATTCAC CATTGTCTTA TGAGTGCACT
CTGCCTGTAA CGATGGAAGT CCCTGAAGAC ACTGACATGT ATTTACCGAT GGCATCGCGC
TTAGCACAAT TGGTTACCAT AGATGTGTTG GCAACAGGCT TTACCTTACG TAGAGGCCCT
CGTTTCCGTG ATAATTTAAA ACGTGTGAAG GAAGTGTTGA AAGAATCTCG TGTGAACAAG
GATTTGACCA TCTAA
|
|---|
| Protein sequence | MNTLEKVQKS LTQFSKSERK VAEVILASPQ TAIHSSIATL AKMADVSEPT VNRFCRRLDT
KGFPDFKLHL AQSLANGTPY VSRHVEEDDT PESYTTKIFE SSMASLDTAR QSLDTSAINK
AVDILTQAKT ISFFGLGASA SVAHDAQNKF FRFNVPVICF DDVLMQRMSC INCNEGDVVV
LISHTGRTKS LIEIARIARE NGAAVIGITA RNSPLSYECT LPVTMEVPED TDMYLPMASR
LAQLVTIDVL ATGFTLRRGP RFRDNLKRVK EVLKESRVNK DLTI
|
|---|
| |