| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1887 |
|---|
| Symbol | |
|---|
| ID | 4278345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 2230607 |
|---|
| End bp | 2232448 |
|---|
| Gene Length | 1842 bp |
|---|
| Protein Length | 613 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638134671 |
|---|
| Product | peptidyl-dipeptidase A |
|---|
| Protein accession | YP_750571 |
|---|
| Protein GI | 114563058 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1164] Oligoendopeptidase F |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.90705 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTGC CTTTAAAACG ACCGTCTCAA ATTGCACTAA TTGTCTCAAT AGCATTAGGA
TTAAGTGCCT GTAATGACAC TCAAGAGCCT GCTCCCGCTC CAGTTGAAAA AATTGATGCC
ACTGCAGCAA TTAATTTCAT TAACCAAGCA GAAGCCGATT TAGCGGATTT GTCGATTGAA
GCTAATCGTG CGGAATGGAT TTATTCCAAT TTTATCACTG ACGACACCGC GGCTTTATCT
GCCGCAATGG GTGAAAAAGT CACTTCAACA TCTGTGCGCT ATGCAACAGA AGCGGCAAAA
TATGCCAATG TAGAACTTGA TGCCGTTAAT GCCAGAAAAC TTAACAGCTT ACGCAGCAGC
CTTGTTTTAC CTGCCCCGCT AGACCCAGCT AAGAACGCAG AACTTGCGAG TATCGCATCT
GAACTCAACG GTCTATATGG TAAAGGAAAA TATTGTTTTG CTGATGGTCG CTGTTTAACT
CAACCAGAGC TATCAAACCT TATGGCGGAG TCTAAAGATC CCGCGGTACT TTTAGAAGCT
TGGCAAGGTT GGCGTGAAAT AGCAAAACCA ATGCGTCCAC TATTTGAACG TGAAGTCGAA
TTAGCCAATC AAGGCGCGCA AGATTTAGGT TACGCCGACT TATCTGAATT ATGGCGTAGT
CAGTATGACA TGGAGCCAGA AGCATTCTCT GCCGAATTAG ACCGCCTATG GGCACAAATT
AAGCCTTTAT ATGATTCATT ACATTGTTAT GTGCGTGGTG AATTAAACCA GCAGTACGGT
GATGATGTTG CGCCTAAGAC GGGCCCTATC CCTGCACATT TATTGGGCAA CATGTGGGCT
CAGCAATGGG GCACGATTTA TAACAACGTA GCGCCTAAAG ATGCTGATCC CGGATACAAT
GTTACCGAAC TGTTAGCTAA AAATGGCTAT GACGAAATTA AAATGGTCAA ACAAGCTGAA
GGTTTCTTCA CTTCACTTGG CTTTGGCGAG CTGCCAGAAT CGTTTTGGAC TCGCTCAATG
TTTGTTCAAC CGCAAGACCG TGATGTAGTG TGTCATGCAT CTGCGTGGGA CTTAGATAAT
CTGGATGATA TCCGCATAAA AATGTGTATC CAGAAAAACG CTGAAGATTT TACCGTCATT
CATCACGAAT TAGGCCATAA CTTCTATCAA CGCGCTTATA AAAATCAGCC GTTTATCTTT
AAAAACTCTG CCAACGATGG TTTCCATGAA GCCATTGGTG ACACGATTGC GTTATCAATT
ACACCTAAAT ATTTACAAAA AATCGGATTA CTCGAAACTG TACCTGATGC ATCAAAAGAC
ATTGGTTTAT TGTTAAAACA AGCATTAGAT AAAATTGCCT TTATGCCTTT TGGTTTAATG
ATTGACCAAT GGCGCTGGCA AGTATTTAAC GGCACCATTA AACCTGATCA ATATAATCAA
GCTTGGTGGG ACTTACGCGA AAAATACCAA GGTGTTAAAG CGCCAATTGA ACGTACAGAA
GCCGATTTTG ATCCTGGTGC TAAATACCAT GTACCAGGCA ATGTTCCTTA TACACGTTAT
TTCTTAGCAC ATGTGTTGCA GTTCCAATTC CACAAAGCAC TGTGTGATAT TGCAGGAGAC
ACCGGCCCAG TTCATCGCTG TAGCATTTAT GGAAATAAAG AAGCTGGGGC TAAGTTGAAT
GAAATGCTCG AAATGGGCGC CAGCAAACCT TGGCCGGAAG CACTGAGTGT TGTGACTGGG
TCTGATAAAA TGGATGCCAA GGCAGTATTA GATTACTTTG CACCATTGCA AGTGTGGTTA
GATGAGCAAA ATACCCAAGC TAATCGCCAG TGTGGCTGGT AA
|
|---|
| Protein sequence | MNLPLKRPSQ IALIVSIALG LSACNDTQEP APAPVEKIDA TAAINFINQA EADLADLSIE
ANRAEWIYSN FITDDTAALS AAMGEKVTST SVRYATEAAK YANVELDAVN ARKLNSLRSS
LVLPAPLDPA KNAELASIAS ELNGLYGKGK YCFADGRCLT QPELSNLMAE SKDPAVLLEA
WQGWREIAKP MRPLFEREVE LANQGAQDLG YADLSELWRS QYDMEPEAFS AELDRLWAQI
KPLYDSLHCY VRGELNQQYG DDVAPKTGPI PAHLLGNMWA QQWGTIYNNV APKDADPGYN
VTELLAKNGY DEIKMVKQAE GFFTSLGFGE LPESFWTRSM FVQPQDRDVV CHASAWDLDN
LDDIRIKMCI QKNAEDFTVI HHELGHNFYQ RAYKNQPFIF KNSANDGFHE AIGDTIALSI
TPKYLQKIGL LETVPDASKD IGLLLKQALD KIAFMPFGLM IDQWRWQVFN GTIKPDQYNQ
AWWDLREKYQ GVKAPIERTE ADFDPGAKYH VPGNVPYTRY FLAHVLQFQF HKALCDIAGD
TGPVHRCSIY GNKEAGAKLN EMLEMGASKP WPEALSVVTG SDKMDAKAVL DYFAPLQVWL
DEQNTQANRQ CGW
|
|---|
| |