Gene Sfri_1875 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1875 
Symbol 
ID4278334 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp2218267 
End bp2218896 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content39% 
IMG OID638134657 
Productrhomboid family protein 
Protein accessionYP_750560 
Protein GI114563047 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.413109 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCTAAATC ATAAATCAAA CACTGTTGGA CTTTATCACT TTGTTGTTGT CATCAGCCTT 
ATTTGTATTG GGCTGTTTGC AGCAGATATC CCTACGCCAG CATTTTTGCC TATTGATCAG 
TATTTAAGTT ATCAATATAA CGCCATTACT GATGGACAAA TATGGCGATT AATCACCGGT 
AACCTGTTGC ATACTAATTT ATGGCATTTG CTGATGAATT TGGCAGGATT TTGGGTGATT 
GTATTTTTAC ATGAAGTCCA TTACAAGCGT CATCCAGGCA AGTTGATATT ACTGTTTCTC 
AGTTTATGTT TATTAGAAGG TATTGGTTTA TATTTCTTTT ATCCTAGTCT AAAAGCTTAT 
GTAGGCTTAA GTGGTTTGTT GCATGGGTTG TTTGCTTTTG GTGCAGTAAT GGACATTCGC 
AAAGGTTACC GTTCAGGTTA TTTACTGTTG CTTGGCGTGA TCATTAAAGT CGGATACGAG 
CAGGTATTTG GTGCGACGAG CAGTATTACC CAGTTAATTA ATGCCAGAGT TGCCACTGAA 
TCACATCTGG TTGGTCTTAT TTGTGGAATA TTGTGCGCGT TGTGCTGGTC AGCGATTGCC 
CATCGCTTCA AATATCACCA CCTGCCTTAA
 
Protein sequence
MLNHKSNTVG LYHFVVVISL ICIGLFAADI PTPAFLPIDQ YLSYQYNAIT DGQIWRLITG 
NLLHTNLWHL LMNLAGFWVI VFLHEVHYKR HPGKLILLFL SLCLLEGIGL YFFYPSLKAY 
VGLSGLLHGL FAFGAVMDIR KGYRSGYLLL LGVIIKVGYE QVFGATSSIT QLINARVATE 
SHLVGLICGI LCALCWSAIA HRFKYHHLP