| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1285 |
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| Symbol | dnaE |
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| ID | 4278396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1519083 |
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| End bp | 1522559 |
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| Gene Length | 3477 bp |
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| Protein Length | 1158 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638134060 |
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| Product | DNA polymerase III subunit alpha |
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| Protein accession | YP_749976 |
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| Protein GI | 114562463 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc)
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.876044 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGATC CTCGTTTTGT TCATTTGCGC GTCCACAGTG ATTATTCAAT GTCAGATGGC
GTTGCTAAAG TTAAACCTAT TATTGCTGCT GCTGAAAATC AGGGGATGGC AGCAATAGCG
TTAACTGATC AAAACAACTT TTGTGGTTTG GTTAAGTTTT ATGGTGCTTG TAATGGTGCG
GGAATTAAGC CGATCATTGG CGCCGATTTT TGGGTGCAAA CCCCTGGATT TGAAAAAGAA
TTCTGTGCCT TAACCATTAT CGCGATGAAC AATGAAGGTT ACCAAAACCT GACCCAACTG
ATCAGTGAAG CCTATCTTCG CGGTCATGTT GATAACCGTG TGGTGATCGA CCAAGATTGG
TTAGTCAAAT ACAACAGCGG TTTGATCATT ATCTCGGGGG CCAAAGATGG CGATGTCGGC
AAAGCATTAT TAAAAGGTAA TCAAAACCAA GTCGAGTCGT TGATTGCCTT TTATCAACAA
CACTTTGAAG ACCGCTATTA CCTAGAGCTT ATTCGTACTG GCCGAGCACA TGAAGAGCGC
TATTTACACA TGGCGGTTGA GTTAGCATCA ATAAAAGGTT TACCTGTTGT TGCCACCAAC
CAAGTGGTGT TTTTAAAACA AGATGATTTT GAAGCCCATG AAATCCGGGT CGCTATTCAT
GATGGTTTTA CTTTAGTCGA TCCACGTCGC CCTAAAACCT ATAGCGATCA ACAATATCTG
CGCACCGAAG ATGAAATGAT TGCATTATTT GCTGATATTC CGTCAGCAAT TCAAAACAGC
GTTGAAATAG CGAAACGCTG TAATGTCACC ATTCGCCTAA ATGAATACTT TTTGCCTAAT
TTCCCTACCG GTGACTTATC CATTGAAGAT TTCTTGGTTA ACGTGTCCGT TAAAGGCTTA
GAAGAACGTC TTGAGTTTTT ATTTCCAAAC CCACAAGTTC GAGCCGAAAA GCGGGGCGAA
TATGACGAAC GTCTCGAGAT TGAATTAAAG GTAATTAACC AGATGGGTTT CCCTGGTTAC
TTCCTTATCG TGATGGAGTT TATTCAGTGG GGCAAAGACA ACGGCATTCC AGTTGGTCCC
GGCCGTGGTT CTGGTGCGGG ATCGTTAGTC GCATACGCGC TTAAAATTAC CGACTTAGAT
CCACTAGAAT ACGATTTACT GTTCGAACGT TTCTTGAACC CTGAACGTGT ATCCATGCCC
GATTTCGACG TCGACTTTTG TATGGACCGA CGCGATGAAG TCATTGACCA CGTAGCAGAA
CTATACGGTC GAGAAGCGGT ATCACAGATT ATTACCTTTG GTACCATGGC GGCCAAAGCC
GTTGTGCGCG ATGTTGGCCG CGTATTAGGT CATCCTTACG GGTTTGTTGA ACGTCTAACT
AAATTAATCC CCGCAGAACC AGGGATGACA TTGGCGAAAG CCTTTGAAGT TGAACCCGCG
CTGCCTGAAG CCTATGACGG TGATGAAGAC GTTAAAGAGC TTATCGATAT GTGTCGCCGC
TTAGAAGGGG TAACACGTAA CGCGGGTAAG CATGCCGGTG GTGTGGTTAT CGCCCCGACT
CGAATTACCG ACTTTGCACC GTTATATTGC GATGCCGAAG GCTTAAACCC CGTTACACAA
TTTGACAAAA ATGACGTTGA AACTGCTGGT CTGGTTAAGT TCGATTTCTT GGGCTTACGT
ACCTTAACCA TTATTGATTG GGCATTGCAG ATGATTAATC CGCGCCTGAT TAAAGAAGGT
AAAGACCCCG TTAGTATCGA AGCCATTCCG CTTGCCGATC CTGCTTGTTT TAGATTACTG
CAACGCTACG AAACAACCGC GGTATTCCAG CTGGAATCTC GCGGTATGAA AGACCTGATT
AAACGTCTGC AACCCGACTG TTTTGAAGAC ATGATTGCGC TCGTGGCACT TTTCCGCCCA
GGTCCTTTGC AGTCAGGCAT GGTTGACAAC TTTATTGAAC GTAAGCACGG CCGTGAAGAA
GTGTCATATC CAGATGCTGA ATATCAGCAT GAGTCACTAA GAGAGTTATT GTCACCGACC
TACGGCATTA TTTTGTACCA AGAGCAGGTG ATGCAGATTG CTCAGGTATT GTCGGGTTAC
ACCCTAGGCG GCGCGGATAT GCTCCGTCGT GCAATGGGTA AGAAAAAACC TGAAGAAATG
GCCAAGCAGC GCGGCACGTT TAAAGAAGGT GCAATTAACA ACGGCGTCGA CGGCGACTTG
TCGATGAAAA TCTTCGACTT GGTGGAAAAG TTCGCCGGTT ACGGTTTTAA CAAATCGCAT
TCTGCCGCTT ATGCACTGGT GTCGTATCAA ACGTTATGGT TAAAAACCCA TTTCCCATCG
CAGTTTATGG CCGCGGTAAT GTCTGCCGAC ATGGACAACA CCGACAAAAT CGTCACCTTG
GTTGATGAAT GTGAACGCAT GGGCTTGCCG CTAATTCCGC CTGACGTAAA CAAAGGCTTA
TTCAAGTTTA CGGTCGATGA CGACCTCAAT ATTGTTTATG GTATCGGTGC GATTAAAGGC
GTGGGTGAAG GTCCGGTAGA TTCTATTTTA GAAGCCCGTA AAAATGGACC GTTTACCGAC
CTGTTCGATT TTTGTGCTCG AATTGATTTG AAAAAGCTCA ACAAGCGAGT GATTGAAAAG
CTTATCCTTG CAGGCGCCTT AGACACATTA GGCCCGCATC GAGCATCAAT GATGGCGACC
TTGCCTCAAG CGATTAGTGC AGCGGCGCAA CATGCTAAAG CAGAAGCGAC TGGTCAAAAT
GACATGTTTG GTTTACTCAA TAGTGAACCT GAAGACAGTA AGCAAAACTT TGTCCATTGT
ACTCCGTGGC CAGACAAAAT TTGGTTGGAA GGTGAGCGCG AAACATTAGG GCTTTACCTT
ACTGGTCACC CCATTAATCA GTATTTAAAA GAACTTAAGC AATACACTAA TGGCCGCTTA
AAAGACATTC ACCCAACCGA GCGCGGTAAA ACCGTTAAAG CGGCTGGTCT AGTGGTGGCT
ACGCGTGTGA TGATCACTAA GCGTGGCTCA AAAATGGGCT TAGTCACATT AGATGACAAA
AGTGCTCGCC TAGAGGTGAT GCTATTTACC GAGCCGTTTG AGAAGTTTGG TCATATGCTT
GAAAAAGACC GCATTCTTAT TTGTGAAGGT GATGTCAGTT TTGATGATTT CTCTGGCGGC
AATCGCATGA ACGCCCGTAA TATCATTGAA ATTGGCGAAG CACGCAGTCA CTTTGCCAAA
GCGGTTGAAA TCAATGTTCA TGGCGATGAT GTCACGCCTG ACTGGTTACA AACCTTTGAG
CAAACATTAA CACCGTGGCG TAAGGGCGCC GTGCCTGTGG TGATTAACTA CACCAAACAA
CAAGCCAGCG GCAAAATCGT GTTAGGTGAA GAGTGGCGAG TTAACCCTAG TGATGAGTTA
ATGTTAGCCC TCGAAAGCAT GCTTGGTTCA ACTAACGTCA AAATCGTGTT TAATTAG
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| Protein sequence | MSDPRFVHLR VHSDYSMSDG VAKVKPIIAA AENQGMAAIA LTDQNNFCGL VKFYGACNGA
GIKPIIGADF WVQTPGFEKE FCALTIIAMN NEGYQNLTQL ISEAYLRGHV DNRVVIDQDW
LVKYNSGLII ISGAKDGDVG KALLKGNQNQ VESLIAFYQQ HFEDRYYLEL IRTGRAHEER
YLHMAVELAS IKGLPVVATN QVVFLKQDDF EAHEIRVAIH DGFTLVDPRR PKTYSDQQYL
RTEDEMIALF ADIPSAIQNS VEIAKRCNVT IRLNEYFLPN FPTGDLSIED FLVNVSVKGL
EERLEFLFPN PQVRAEKRGE YDERLEIELK VINQMGFPGY FLIVMEFIQW GKDNGIPVGP
GRGSGAGSLV AYALKITDLD PLEYDLLFER FLNPERVSMP DFDVDFCMDR RDEVIDHVAE
LYGREAVSQI ITFGTMAAKA VVRDVGRVLG HPYGFVERLT KLIPAEPGMT LAKAFEVEPA
LPEAYDGDED VKELIDMCRR LEGVTRNAGK HAGGVVIAPT RITDFAPLYC DAEGLNPVTQ
FDKNDVETAG LVKFDFLGLR TLTIIDWALQ MINPRLIKEG KDPVSIEAIP LADPACFRLL
QRYETTAVFQ LESRGMKDLI KRLQPDCFED MIALVALFRP GPLQSGMVDN FIERKHGREE
VSYPDAEYQH ESLRELLSPT YGIILYQEQV MQIAQVLSGY TLGGADMLRR AMGKKKPEEM
AKQRGTFKEG AINNGVDGDL SMKIFDLVEK FAGYGFNKSH SAAYALVSYQ TLWLKTHFPS
QFMAAVMSAD MDNTDKIVTL VDECERMGLP LIPPDVNKGL FKFTVDDDLN IVYGIGAIKG
VGEGPVDSIL EARKNGPFTD LFDFCARIDL KKLNKRVIEK LILAGALDTL GPHRASMMAT
LPQAISAAAQ HAKAEATGQN DMFGLLNSEP EDSKQNFVHC TPWPDKIWLE GERETLGLYL
TGHPINQYLK ELKQYTNGRL KDIHPTERGK TVKAAGLVVA TRVMITKRGS KMGLVTLDDK
SARLEVMLFT EPFEKFGHML EKDRILICEG DVSFDDFSGG NRMNARNIIE IGEARSHFAK
AVEINVHGDD VTPDWLQTFE QTLTPWRKGA VPVVINYTKQ QASGKIVLGE EWRVNPSDEL
MLALESMLGS TNVKIVFN
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