Gene Sfri_1210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_1210 
Symbol 
ID4278024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp1420316 
End bp1420987 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content39% 
IMG OID638133985 
Producthypothetical protein 
Protein accessionYP_749901 
Protein GI114562388 
COG category[S] Function unknown 
COG ID[COG5587] Uncharacterized conserved protein 
TIGRFAM ID[TIGR02453] conserved hypothetical protein TIGR02453 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.819898 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCAGTC AACATAGTTT CGATTTTTTA AACAGTCTAG CAGTTAACAA CGATAGAGAA 
TGGTTTAAAA CCAACCAACA GCAATACGAA GATCAAGTGA GAACACCAGC ATTACAGTTT 
ATAGAAGCCA TGCAAGGGCC TATTTTAGGT TTGTCTCCAC GCTTCACTGC AGTGGCTAAA 
AAAGTTGGTG GTAGCTTAAT GCGCCCACAA CGCGACAGTC GCTTTAGTAA AGATAAAACA 
CCCTATAAGA CTAATGTCGG CATTCAGTTT AAACACTTTC AAGCCAAAGA TGTCCATGCT 
CCGGGATTTT ATGTTCACAT CGCTAATGAT GAATGCTTCA TTGCCGCGGG TATTTGGCAC 
CCAGAATCAA AAGATCTCAA TGCCATTCGT CATTGTATTG ATGAAAACCC TAATGCTTAT 
CAAAAAGCAT TAACTCAACT GTCGCAAGCA GGATTTGAAT TAACGGGAGA TAGTTTAATT 
AGACCTCCAC GAGGATTTGA TAAACATCAC CCAATGATTG ACGAGCTCAG GCGCAAAGAC 
TTTATTGCCA TCAAACCAAT TAGTTCAGAA CAAGTATGCC AGGCTGATTT TATTGAATTT 
TGTACACAAG AATATCAACA TACGCGCGCC TTGATGGCTT ACTTATGTTT TGCATTAGAT 
TTAGACTTTT AA
 
Protein sequence
MFSQHSFDFL NSLAVNNDRE WFKTNQQQYE DQVRTPALQF IEAMQGPILG LSPRFTAVAK 
KVGGSLMRPQ RDSRFSKDKT PYKTNVGIQF KHFQAKDVHA PGFYVHIAND ECFIAAGIWH 
PESKDLNAIR HCIDENPNAY QKALTQLSQA GFELTGDSLI RPPRGFDKHH PMIDELRRKD 
FIAIKPISSE QVCQADFIEF CTQEYQHTRA LMAYLCFALD LDF