| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1178 |
|---|
| Symbol | |
|---|
| ID | 4278446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1386925 |
|---|
| End bp | 1388355 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638133953 |
|---|
| Product | sigma54 specific transcriptional regulator, Fis family protein |
|---|
| Protein accession | YP_749869 |
|---|
| Protein GI | 114562356 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.128376 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGCAAA TAGAACAAAG AATTTTAATT GTCGGTACCC CATCAGAGCG CGTGACTCGT
TTGTGCTGCA TTTTCGAATT CCTAGGCGAG CAGTGTGAAA TTGTCTCTAA TGAATCTTTT
TTAGCCCTGA TCGAGCAATC TCGGTATCGC GCTGTTGTCA TTGTTGATGA AAACATCAGC
GTCGAGAGTA TTAAAAACAT AGCCGCTATA GTGCCTTGGC AACCGATGTT GTTATTAGGC
GATACCGATA TCAATTTATC CAACATGCTC GGAACAATTG AAGAGCCGAT AAATTACCCG
CAATTGACTG AACTGCTGCA TTTTTGCCAA GTTTTTGGCC AAGCCAAGCG AGAACACACT
TTAACCAGTG GCAACCAAAC CAAACTATTC CGAAGCTTAG TCGGGCGCAG TGAAGGTATT
GCTAAAGTCC GCCATTTGAT TAACCAAGTA TCAAGCTCTG ATGCGACAGT ATTAGTACTG
GGTCAATCGG GGACCGGTAA AGAGGTTGTA GCGCGTAATA TTCATTATTT ATCTGAACGA
CGAGATGGAC CGTTTATCCC GGTCAATTGT GGTGCGATTC CTGCTGAATT ACTTGAAAGT
GAATTGTTTG GCCATGAAAA AGGCTCTTTC ACTGGGGCTA TATCATCTCG TAAAGGCCGT
TTTGAATTGG CTGAAGGTGG CACGCTCTTT TTAGATGAAA TTGGTGATAT GCCGCTGCAA
ATGCAAGTTA AGTTGTTACG TGTGTTGCAA GAAAAGGTAT TTGAACGTGT TGGTGGCAGT
AAAACAATTG CTACCGATGT GCGTATCGTT GCCGCAACGC ATCGCGATCT TGAAACCATG
ATTGTAGATA ACTCATTTCG AGAAGATTTA TATTATCGAC TCAATGTGTT CCCAATTGAG
ATGCCAGGAT TAAGTGAGCG TCGTGACGAT GTGCCGCTAC TATTGCATGA ATTAGTTAGC
CGAGTATTTA ATGAAGGCCG CGGTAAGGTT CGTTTCACTC AACGCGCCAT CGAATCGTTA
AAAGAACACC CTTGGTCTGG TAATGTGCGA GAGTTATCAA ACTTGGTCGA GCGTTTAACG
ATCTTATTCC CTGGTGGATT AGTCGACGTT AATGATTTAC CGCATAAGTA CCGTTATATA
GAGGTACCAG AATATTGCGT TGAAATCAGT GAAGAACAAT TAGAGCGCGA TGCTTTAGCT
TCAATATTCA GTGATGAAGA GCCTGTTGAA ATACCTGAAA CGCGTTTCCC TAGTGAATTG
CCGCCAGAAG GGGTTAATTT AAAAGATTTA CTAGCGGAAT TAGAAATTGA CATGATCCGT
CAAGCGCTTG AGCAGCAAGA TAGTGTTGTA GCAAGAGCTG CTGAAATGTT GGGTATTCGT
CGTACAACAT TAGTCGAAAA AATGCGTAAA TATGGTTTGA GTAAAGACTA G
|
|---|
| Protein sequence | MMQIEQRILI VGTPSERVTR LCCIFEFLGE QCEIVSNESF LALIEQSRYR AVVIVDENIS
VESIKNIAAI VPWQPMLLLG DTDINLSNML GTIEEPINYP QLTELLHFCQ VFGQAKREHT
LTSGNQTKLF RSLVGRSEGI AKVRHLINQV SSSDATVLVL GQSGTGKEVV ARNIHYLSER
RDGPFIPVNC GAIPAELLES ELFGHEKGSF TGAISSRKGR FELAEGGTLF LDEIGDMPLQ
MQVKLLRVLQ EKVFERVGGS KTIATDVRIV AATHRDLETM IVDNSFREDL YYRLNVFPIE
MPGLSERRDD VPLLLHELVS RVFNEGRGKV RFTQRAIESL KEHPWSGNVR ELSNLVERLT
ILFPGGLVDV NDLPHKYRYI EVPEYCVEIS EEQLERDALA SIFSDEEPVE IPETRFPSEL
PPEGVNLKDL LAELEIDMIR QALEQQDSVV ARAAEMLGIR RTTLVEKMRK YGLSKD
|
|---|
| |