| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1114 |
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| Symbol | |
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| ID | 4277035 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1315002 |
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| End bp | 1315787 |
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| Gene Length | 786 bp |
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| Protein Length | 261 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638133888 |
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| Product | type IV pilus biogenesis/stability protein PilW |
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| Protein accession | YP_749805 |
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| Protein GI | 114562292 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02521] type IV pilus biogenesis/stability protein PilW |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.22274 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCACG GAATGCAAAA GGTTGGTCTG ATTACATTAG TGGCTTTATC TGTCACTGCT
TGTGTGACTG AGCGCACTTA CAGCGGTACT GATACCCCTG TAGCAGAGCG TCGGTTTGAT
AAGCAGGGAG CCGCTAGAGA ACGAATGCAA CTTGGGTTAA CTTATCTAAA TCGTGGTAAT
AGCGAACAAG CCAAGTATAA TTTAAATAAA GCTGTTGAAT ATGCGCCGAA TATCAGTGAA
GTTCATATGG CAATGGCTTA TTATTATCAA ACTGTTGGTG ATATAGAGCG AACAGAAGAG
TCATATAAAA AAGCCATTAG CTTGAGTGAT GTTACTGGTG ATGCACGGAA TAATTTTGGG
GTGTTTTTGT GTCAGCAAAA TAATTTTGCT GAGTCTGAGA AAATGTTTCT TGCGGCGATT
GAAACACCTA AATATACCCG TACCGCATCG AGTTATGAAA ACTTAGGCGT ATGCAGCCGT
AAAGCCGGTG ATAAAGAAAA AGCGCGACAG TATTTTAATA TGGCGTTAAA GTATGATCAA
AGACGTAAAG TAACGTTATT AGAGTTAACC GAGTTAGCCA TGGAAGATGC TGACTACGGC
AATGCGCGCG AACAACTCGC AAGATACCAT CGAGTTGCTA GCGAATCAGC AGAAAGTTTA
GCCTTAGGGA TTAAGATTGA GCGGGCGGCA AATGATATAG AGGCCGTAAA ACGATTTGGC
ATTTTACTCA TTGCGAAGTT TCCTGCATCT CCACAAGCCA AAAATTATAG AGCTAACTTG
AATTAA
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| Protein sequence | MKHGMQKVGL ITLVALSVTA CVTERTYSGT DTPVAERRFD KQGAARERMQ LGLTYLNRGN
SEQAKYNLNK AVEYAPNISE VHMAMAYYYQ TVGDIERTEE SYKKAISLSD VTGDARNNFG
VFLCQQNNFA ESEKMFLAAI ETPKYTRTAS SYENLGVCSR KAGDKEKARQ YFNMALKYDQ
RRKVTLLELT ELAMEDADYG NAREQLARYH RVASESAESL ALGIKIERAA NDIEAVKRFG
ILLIAKFPAS PQAKNYRANL N
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