| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_1056 |
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| Symbol | |
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| ID | 4278221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 1243170 |
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| End bp | 1244243 |
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| Gene Length | 1074 bp |
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| Protein Length | 357 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133824 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_749747 |
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| Protein GI | 114562234 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGAAT TACATTACCT ATTTGGTAAA CCAATAAGCC AAGCTGATTT ACGTACCTAT
AACAGCGACT TTATAGTTAA AGAAATTTTG CCTTTTACTC CAACAGGGGA AGGCGAGCAT
CATATGCTTC ATGTACGTAA AAATGGCATG AATACCGTTT ATGTTGCCGA GATATTAGCT
AAATTTGCGA AAGTGCATCC AAAAGAAGTG ACTTTTGCAG GTCAGAAAGA CAAAAATGCC
ATCACTGAAC AATGGTTCGG GATACGCATT CCTGGTAAAG AAACGCCAGA GTGGACGCAG
CTGAATGATG ATAAATTAAC CATTCTGTCG AGCAGTCGTC ACAGTAAAAA ATTGCGTATT
GGCGCCTTGC TAGGAAATCG ATTTGTTCTG ACATTACGCA ATATCAATGA TACGGCCGAT
GTCGAGTCTC GTTTACAGCA GATAGCAAAA CTCGGAGTCC CTAATTACTT TGGTGAGCAG
CGCTTTGGCC ACGATGGTAA AAACCTGATC TTAGGCAGAC AAATGCTGAG TGGTGGTCGT
AACATAAAAG ATCGCCATAA ACGCAGCATG TATTTATCAG CTGTGCGTTC TAATGTGTTC
AATCAGGTGG TGTCATTTCG ATTAGCTAAT CATCAGGCAG ATACCGTCGC GGGTGATTGC
GTGATGTTAG CTGGTAGTAA AAGCTATTTT ACCGCCGAAG TATGGGATGA GGTACTTAAC
AACCGCTTAG CTGAAAAAGA TATCCAACTT TCCGCTCCAC TTTGGGGAAG GGGAACGCCA
TTAGCACAAG GTGAGGCATT AGCTTTAGAA TTAACGCCAT TAGCTGAATT ATCGGCTGAT
TTACAGGGAC TCGAAGAAGC AGGTTTATCA CAAGAGAGAC GGCCATTATT ACTTGAACCT
CAAGGAATGA AATGGCAGTT TGATGCTGAT ACGCTCACTG TTGAATTTGT ATTACCTGCA
GGGAGTTATG CCACCTCGGT GTTACGCGAA CTTGCTGATT ATCAAGATGT CCAAGAGTCA
CAACGAAAAG TCATGGTTGC CGAGCAACAA GCACAAAAAA ATGAAGAGTG TTAA
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| Protein sequence | MKELHYLFGK PISQADLRTY NSDFIVKEIL PFTPTGEGEH HMLHVRKNGM NTVYVAEILA
KFAKVHPKEV TFAGQKDKNA ITEQWFGIRI PGKETPEWTQ LNDDKLTILS SSRHSKKLRI
GALLGNRFVL TLRNINDTAD VESRLQQIAK LGVPNYFGEQ RFGHDGKNLI LGRQMLSGGR
NIKDRHKRSM YLSAVRSNVF NQVVSFRLAN HQADTVAGDC VMLAGSKSYF TAEVWDEVLN
NRLAEKDIQL SAPLWGRGTP LAQGEALALE LTPLAELSAD LQGLEEAGLS QERRPLLLEP
QGMKWQFDAD TLTVEFVLPA GSYATSVLRE LADYQDVQES QRKVMVAEQQ AQKNEEC
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