| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0996 |
|---|
| Symbol | |
|---|
| ID | 4278370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 1166185 |
|---|
| End bp | 1167096 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638133764 |
|---|
| Product | lipoprotein NlpI |
|---|
| Protein accession | YP_749687 |
|---|
| Protein GI | 114562174 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00555439 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATGTA AACTACGCAC CACAATCGTT GCCGTTGTTG TCGGTGCAAG TATGTTGTTG
TCAGGGTGTG CTGCAACGTT GGGTTCAAAG GATAATATTG CAGGGCAGAT GATTGTCGCG
CCTGTCATGC CTGATTATAA ATTGGAAGTG ACACTCGCAA AGCTAAATGA AATTTTGGCT
ACTATGGAGT TAACTGACGA ACAACGTGCA CGTTTTCATT ACGATCGTGG GGTCATTTAT
GACAGTGTCG GATTGCGTTT ACTTGGCCGA ATCGATTTTC ATCAAGCATT AAAATTACAA
CCCGATCTAG CCGATGCGTA TAACTTTCTT GGTATTTATT ACACTCAAGA AGGTGAGTTC
GACAGTGCTT ATGAAGCATT TGATGGTGTC CTTGAATTGT CACCAAACTA TGACTATGCC
TTTTTAAATC GTGGTATTGC ATTATATTAT GGCGAACGTT ACGAATTAGC CGTTAATGAT
ATGAAAGCTT TCTATGATCG TGATCCTAGT GACGGTTATC GAGCTTTGTG GCTGTATTTG
ATGTCTTCAT CTATTGATAG CAAGCTGGCC TTGGCTGATC TTGGGATACA GCGTCAGCAG
TTAAAGGATC AAGATTGGGC CAGTGTGTTA GTCGATTTTT ATTTAGGTAA GATCAATCAA
GAACAAGTAT TTGCAGCTGC GAAAGAAGGT TTATCTCAGC CCAAAGAATA TGCAGAACGT
TTATGTGAAG CGTATTTTTA CTTAGCGAAA CATTCTGCTG AAAATGGTCA ATATCAGCAA
GCCGCTAATT TTTATCGTTT AACATTAGCC ACCAATATCT ATGATTTTGT TGAGCATCGT
TATGCGAGAA TTGAATTGGC TAGAATGAAA AATATGATTC AACAGTCTAG CGAATTGTCA
TCGAAGAGCT AA
|
|---|
| Protein sequence | MECKLRTTIV AVVVGASMLL SGCAATLGSK DNIAGQMIVA PVMPDYKLEV TLAKLNEILA
TMELTDEQRA RFHYDRGVIY DSVGLRLLGR IDFHQALKLQ PDLADAYNFL GIYYTQEGEF
DSAYEAFDGV LELSPNYDYA FLNRGIALYY GERYELAVND MKAFYDRDPS DGYRALWLYL
MSSSIDSKLA LADLGIQRQQ LKDQDWASVL VDFYLGKINQ EQVFAAAKEG LSQPKEYAER
LCEAYFYLAK HSAENGQYQQ AANFYRLTLA TNIYDFVEHR YARIELARMK NMIQQSSELS
SKS
|
|---|
| |