Gene Sfri_0852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0852 
Symbol 
ID4278680 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp1000910 
End bp1001554 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content48% 
IMG OID638133618 
Productanti-ECFsigma factor, ChrR 
Protein accessionYP_749543 
Protein GI114562030 
COG category[T] Signal transduction mechanisms 
COG ID[COG3806] Anti-sigma factor 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.413109 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAAACA TGGATCTTAG CCAACGAGTG GTGATAAACA CAGCCGATCT TGAATGGCAA 
AATAGCCCCG CTGCGGGCGT ATTACGTAAA CGCTTAGCGC GTGAAGAAGC CGAGCGAGGC 
CATGCGACCA GCATTGTTAA ATACCAAGCC GGTGCTAAAT TTAACTCACA CCCTCATCCA 
TTAGGCGAAG AGATTTTAGT GCTCGACGGG GTGTTTTCTG ATGAAACCGG TGACTATCCC 
GCTGGCACGT ATTTACGAAA TCCTGAAGGT TTTGTCCATG CGCCATTTAG TGTGCAAGGT 
TGTACGTTAT TGGTTAAGTT GCATCAGTTC CAAACCACAG ACTCACAACA AGTGGCCATT 
AATACCAATG AAACACAATG GTTGCCGGGT CATGGTCAGT TGCAGGTTAT GCCGCTTCAT 
CAACATGGTA CCGAATCGAC CGCATTAGTT AAGTGGCCCG CGGGGACACA CTTTCAACCG 
CACCGTCATT TTGGCGGCGA AGAAATCTAT GTCATTAGCG GGGTGTTTAT CGATGAGCTT 
GGCCGTTATC CTGCAGGTAC GTGGATCCGC AGTCCGCATT TAAGTCAGCA TAATCCGTAT 
GTGGAGCAAG ACACGGTTAT TTTAGTCAAA GTAGGCCATT TATAA
 
Protein sequence
MLNMDLSQRV VINTADLEWQ NSPAAGVLRK RLAREEAERG HATSIVKYQA GAKFNSHPHP 
LGEEILVLDG VFSDETGDYP AGTYLRNPEG FVHAPFSVQG CTLLVKLHQF QTTDSQQVAI 
NTNETQWLPG HGQLQVMPLH QHGTESTALV KWPAGTHFQP HRHFGGEEIY VISGVFIDEL 
GRYPAGTWIR SPHLSQHNPY VEQDTVILVK VGHL