| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0787 |
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| Symbol | |
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| ID | 4278704 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 923058 |
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| End bp | 923903 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638133555 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_749480 |
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| Protein GI | 114561967 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGCCG ATAAAACCGA ATACCATATT GATATTACCG AGCACAGTAC TGACGCCATT
GAGCTATTGG CGCAAGTCAG TAGCCTGAGT AAGCAAGTAT TGAAAGATGC TATGCAAAAA
GGCGCTATTT GGCACAGCCA TGGTAAACAA ACTAATCGTA TTCGCCGTGC AAAAAAACCT
TTGCAACCGG GTGACAAGCT GCATCTTTAT TACAATCAAT ACATTCTAGA TGAACAAGTC
ACACCCGCTG AGTTATTGTT TGATGAAGCT GAATACAGCA TTTGGTACAA GCCTTATGGT
ATGCGTTGCC AGGGCTCAAA GTGGAGCGAT CACACCACTA TTAATCGCTA TGCTGAATTA
AATATGCAGC CACAGCGCAA TGCCTTTATT ATTCATCGCC TAGACCGTGC TGCCACCGGA
TTATTAGTAT TGGGACACAG TAAAAAAGCC ACTGCCGCTA TTGCTAAGCT GTTTGAAACT
CGCGAATTAG AAAAGTACTA TCAAGTGATT GTTGAAGGTG AGTTTCCGAG CAATCCCGTT
ACCATTAATA CTCCAGTCGA TAATAAACCG GCGTTATCAC ACGCCACCTT ACTGACCTAC
AACTCAGAGT TAAATCAATC CAAGGTACAG GTAAAAATAG ACACGGGTCG TAAGCATCAA
ATTCGTATTC ATATGGCAAG CTTAGGCCAC CCCGTTGTAG GCGACCGTTT GCATGGCAAT
GGCGACGAGC ACTCGCCCGA CCTTGCACTG ACATCGTGTT ATTTCCGTTT TGTTTGCCCA
TTAAGCAACA CGCTAAAAAC CTTTGAACTG CCAGAGCATT ACCGACCAGC ATTTATTACC
CATTAA
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| Protein sequence | MMADKTEYHI DITEHSTDAI ELLAQVSSLS KQVLKDAMQK GAIWHSHGKQ TNRIRRAKKP
LQPGDKLHLY YNQYILDEQV TPAELLFDEA EYSIWYKPYG MRCQGSKWSD HTTINRYAEL
NMQPQRNAFI IHRLDRAATG LLVLGHSKKA TAAIAKLFET RELEKYYQVI VEGEFPSNPV
TINTPVDNKP ALSHATLLTY NSELNQSKVQ VKIDTGRKHQ IRIHMASLGH PVVGDRLHGN
GDEHSPDLAL TSCYFRFVCP LSNTLKTFEL PEHYRPAFIT H
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