| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0771 |
|---|
| Symbol | |
|---|
| ID | 4277938 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 902892 |
|---|
| End bp | 905474 |
|---|
| Gene Length | 2583 bp |
|---|
| Protein Length | 860 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638133540 |
|---|
| Product | peptidase S45, penicillin amidase |
|---|
| Protein accession | YP_749465 |
|---|
| Protein GI | 114561952 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2366] Protein related to penicillin acylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA ATAAAATTCT ACTCGCTATC GGTATGGCTT CTAGCGTTGC GATAGTGGGT
TGCGGTGATG ACACTCAATA CGGTAAAACC CCTCAACCAG ATCCACAACC CGAAGTCGTT
ACTCCTCCTT TACAAGCTTT TGCTCCTAAT GGCACCTTAA AAGTTCAAAT TCGCCGAACT
CAATATGGTG TACCACACAT TACAGCCGAC AATTTAGAGA GTCTTGGTTT CGGTAATGGT
TATGCCCAAG CACAAGATAA TTTATGTGTG ATAGCGGATG GCTTTATTAA AGCCAATTCT
GAACGGTCGA TGTACTTTGG CCCCCATGCA TCGATTGACT TTACAACCGG ACTTCCAACC
AGTGAAGATA ACGGTAACTT AATTTCTGAC TTTGCCTACA AAGCATTGAA AATCAGGCAG
CTTGCAGAAA ACCAATATCC ACAGTTTAGT TATAATTCGC GTGCATTAAT GGAAGGTTTT
AGTGCGGGTT ATAATCAGTA TCTAGCTGAT GTAGAAGCCG GCACTCAAAC CGGTGAGCCA
TTTTGTGCTG GTCAACCGTG GGTTAAACCT ATTAGCGGTG TCGATGTAGC AAGCTATCTA
TTTTCCATCG CGCTATTACC TGGGGCGGCA AACTTTTTAG ATTTAATTTT TTACGCCAAC
CCTGGCGATG CTCAAGAGTA TTTACCGCGT ATTGTTGGAC CAGCCCCGTC CACTGCGCAA
ACTGCGTTTG TGCAGGATAT GAACAACAAA TTAATCGCAC GGTCTGCAAC CATTACCACA
CCGGAAACTA ATCCGCGAAA TTTGGGCTCT AATGGTTGGG GTTTAGGAAA GGATAAAACC
GAAAATGGTA AAGGCATGGT GTTGGGCAAC CCGCATTTTC CGCATACCGG TAATTTACGT
TTTTGGCAGT CGCATTTGAC TATACCAGGG CAAATGGATG TGATGGGTGG CTCGTTAGCC
GGTATGCCTG GATTGGTTAA CATTGGTTTT AATAAAGATG TAGCCTGGAC CCATACCTTT
TCAACCGCAG AACATTTTGT AATGTATAAC CTTGAGTTAG TTGCTGGTGA TAGATTGCAA
TATATGTACG ATAATTCGCC GATGCCAATC AACAAAGAAA CGGTTTCGGT ATTAGTTAAT
GCAGGCCCCG CTGGCATGTT GGTAGCACAG AAGGATATTT ACACCACAGC CAAAGGTCCG
ATGGTTGAAG CACCACCAAC ATTAGCGCCA TTTGGATGGG ACGATGGCCA GGCTTTCTTT
ATTCAAGATG CCAACATGGC CAATAAAGAT CCGCTCGATC ATTGGTTAGC CATGAACCTT
GCATCCAATA AAGATGAGTT TCAACAAGCG TTTAAAAATT ATGATGGGGT GATTTTTAAT
AACACCATGT ATGCAGATAA AGAAGGCAAT GCGTTTTATA TTGACGACTC AACCGTCCCG
GGTTTTTCTG ACATAGTGGT CGATATTATT AAGACGACTC CAGCGATACA AGCGGCGAGA
GCCCAAGCAG GGTTTACTAT TCTACCCGGT AATACCTCGG TATTTAGTTA TGATTCGCCA
ATGCCATATG AACGTGCGCC TAAGCTTGAA CGTACAGACT TTGTGCAAAA CTCAAATAAC
TCCTTTTGGT CTACTAACTT AGCGGCACCG CTCGAAAACT ACTCTCCTTT ATACGGTCCA
GAACGAGGTC AATTATCGTT ACGTACTCGT ATGGGCTTAA CCTTAATGGA AGATGCCGCG
GGTGATGACG GTAAATTTAA TATTGAGGAA TTAGAGGCGG CTTTATTATC CAATCGGGCT
TATCTTGCTG AATTAGTGTT ACCCGACTTA ATTAGCCAGT GTGAGCAACA AGGGGCTACG
CCGGTGATGG TTAGCGCAAC ATTGTCTAAA GATGTTTCGG CATCATGTGC CGCGCTAAAG
GCGTGGAACG GTAAACAAGA TAACGACAGC AAAGGCGGGG CGTTACTTCG AGAGTTTGCC
CATCAGTTCA ATCAAAACAC CATGTTAACA GAAGCTTTTG ATTATATGAG TGCGGCAACC
ACGCCCAATA AGCTCAACAC AGATGGTAGT GCATTAGTGG CTTTAGCTCA TGCAGCTTTG
AATCTTGAAG CGGCAGGTTT TGCGGTTGAT GTTGCGTTAG GGGATGTGCA ATTTGTTGAA
AAGTCACTTC CTGATGGTAC TGCATCTGGG GTTAAGTTAC CTTGGCCTGG TAGCCATAAT
GCGGAAGGTG GCTTTAACGT ATTCTCGACC AGTTTATCGG GCGATGACAC CTTAATTCCT
CAGCATAAAT ATAGCCCTGT TATGGATGTT GTTTCTGGTA ATGCTACAGC ATCAGGATTA
ACGGCTGAAG GTTACCAAGT GCGTTATGGT TCAAGTTGGA TGATGACAGT GAGCTTTACT
GATGATGGTC CTAAGGCAAA GGGCATTTTG ACCTATTCAG AGTCTAGCAA TGTGTTGAGT
CCAAGTTTTT CCGATCAAAG TGAGTTGTAT TCTTCGACAA AACAATTACG TCCATTGCTA
TTTACTGAGG CAGAAATCCA AGCATCAGTT GAATCTAGCA TCGAGCTAAC CCTACAAAAA
TAG
|
|---|
| Protein sequence | MKLNKILLAI GMASSVAIVG CGDDTQYGKT PQPDPQPEVV TPPLQAFAPN GTLKVQIRRT
QYGVPHITAD NLESLGFGNG YAQAQDNLCV IADGFIKANS ERSMYFGPHA SIDFTTGLPT
SEDNGNLISD FAYKALKIRQ LAENQYPQFS YNSRALMEGF SAGYNQYLAD VEAGTQTGEP
FCAGQPWVKP ISGVDVASYL FSIALLPGAA NFLDLIFYAN PGDAQEYLPR IVGPAPSTAQ
TAFVQDMNNK LIARSATITT PETNPRNLGS NGWGLGKDKT ENGKGMVLGN PHFPHTGNLR
FWQSHLTIPG QMDVMGGSLA GMPGLVNIGF NKDVAWTHTF STAEHFVMYN LELVAGDRLQ
YMYDNSPMPI NKETVSVLVN AGPAGMLVAQ KDIYTTAKGP MVEAPPTLAP FGWDDGQAFF
IQDANMANKD PLDHWLAMNL ASNKDEFQQA FKNYDGVIFN NTMYADKEGN AFYIDDSTVP
GFSDIVVDII KTTPAIQAAR AQAGFTILPG NTSVFSYDSP MPYERAPKLE RTDFVQNSNN
SFWSTNLAAP LENYSPLYGP ERGQLSLRTR MGLTLMEDAA GDDGKFNIEE LEAALLSNRA
YLAELVLPDL ISQCEQQGAT PVMVSATLSK DVSASCAALK AWNGKQDNDS KGGALLREFA
HQFNQNTMLT EAFDYMSAAT TPNKLNTDGS ALVALAHAAL NLEAAGFAVD VALGDVQFVE
KSLPDGTASG VKLPWPGSHN AEGGFNVFST SLSGDDTLIP QHKYSPVMDV VSGNATASGL
TAEGYQVRYG SSWMMTVSFT DDGPKAKGIL TYSESSNVLS PSFSDQSELY SSTKQLRPLL
FTEAEIQASV ESSIELTLQK
|
|---|
| |