| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0626 |
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| Symbol | |
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| ID | 4278426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 729535 |
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| End bp | 730755 |
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| Gene Length | 1221 bp |
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| Protein Length | 406 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638133383 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_749324 |
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| Protein GI | 114561811 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.13673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAACTC ATCACTCAAA AAAGACAGAG ATTAATCCCC TTACTCATGA TGACCAATTA
AAACCTAAAT GGACTCATCT ACTGTTTACT GTTTTACTTT TCAGTATGAG TGCTTGTCAA
TCAACTCAAC CCCAAAACAA AGCTGTAAAG ATTGCTGACC TATTTCATGA TGAAATGTTC
ATGCCTGTTG AGACTGTGTC TATTGATGAT ATTTATCGTT TACCTGAAAA GTTTGTCGCA
CAATTTAGAC GACAGTTTCA AGCCGATAGT ACTCTTCGTA ATCAAAATGT TATGGCTAAT
GAATGGTTGG CGCAATATAT AGGCGCACAA GATGGTGGTT TTGAATACCG TGATAATGTG
ACTCGCTCTG CCAGTGAAAC CGTGCTTAAT CGTCAAGGTA ATTGTATGTC TTTGGTTGTG
TTGTCGGCAG CACTGGCTGA TGCGTTAAAT GTGCCCGTGG AGTTTAATGA CATCGATGTT
GAACCCGTGT GGGATAGACG AGGTGGTTTT TATTTAGTTA ATGGTCACGT TAATTTACGT
TTATTACCTC CGAGGTCAAA TAACACAGTG TTATTTAGAG GTACAGATGT TCTAGTGGAC
TTTTTACCTG AACGTTCTGT GCGTGCTTAT CATAAAAAAA CAGTTAATAA GCGCCAGTTA
ACCTCGATGT TTTATAACAA TATTGCAGCA GAAGCGTTGA TTAACACCGA TTATGATACA
GCTTATGCAT TGGTTAAAAA AAGCATTCAA CTGGATCCGC AACATGTTGC AGCAATCAAT
ACCCTAGCGG TTATTTATCG ACATAAGGGC TACGAAGATG AGGCTGAATA TGCATATCGT
TTAGCGCTAC AAATTGACTC TCAAGATTTA ACCACATTAT ACAATTTGGC GTTGATTTTA
GGTCAACAAG GGCGTTTAGA TGAATGGGCA CAAATACATA AGGTGCTTGA GCTGGCGAGA
ATAAATAATC CGTTTTATTA TTTTGACATG GCTCAACAAG CGTATTTTGA TAAGCAATAT
CAAGATGCAC TCATATGGTA TAAACGAGCT GTTGATAAAG CGGATTATCG CCATGAGTTT
TATTTTGGTT TGTCTAGGGC TTATTGGGCA ACAGGTGAAG AGCGGTTGGC TGAGAAAAAT
CTTAAACGTG CGTTGGCCTT AAGTGATAAT AGTAATAAGC AACGCTACCA AATTAAGCTG
CAAGCGTTGA AACAGGATTA G
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| Protein sequence | MLTHHSKKTE INPLTHDDQL KPKWTHLLFT VLLFSMSACQ STQPQNKAVK IADLFHDEMF
MPVETVSIDD IYRLPEKFVA QFRRQFQADS TLRNQNVMAN EWLAQYIGAQ DGGFEYRDNV
TRSASETVLN RQGNCMSLVV LSAALADALN VPVEFNDIDV EPVWDRRGGF YLVNGHVNLR
LLPPRSNNTV LFRGTDVLVD FLPERSVRAY HKKTVNKRQL TSMFYNNIAA EALINTDYDT
AYALVKKSIQ LDPQHVAAIN TLAVIYRHKG YEDEAEYAYR LALQIDSQDL TTLYNLALIL
GQQGRLDEWA QIHKVLELAR INNPFYYFDM AQQAYFDKQY QDALIWYKRA VDKADYRHEF
YFGLSRAYWA TGEERLAEKN LKRALALSDN SNKQRYQIKL QALKQD
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