| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0433 |
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| Symbol | |
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| ID | 4278410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 478221 |
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| End bp | 479630 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638133191 |
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| Product | type I secretion outer membrane protein, TolC family protein |
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| Protein accession | YP_749133 |
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| Protein GI | 114561620 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.462048 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACTA TTATAAATCA ACAAATAAAG CTAAGCGCTG TTGCTCTTGC TTTATTAATG
TTGGTCTCGC CAACTGCCTC AAGCCAGACT CTTGAGCAAG CTGTTGCGCA TACGCTAGAC
ACAAACCCAG ACTTACGTAT TGCTTTTAAT CGTTTTAAAG CGCGCGAAGA GCAAGTTAAT
CAAGCAGTAG CAGGCTATAT GCCAACCGTA GATATTTCTG CGGGCTATGG CTGGGAGCAA
ACCGATAGCC CTTCAACTCG TCGTAAGGTA GGCCAAGGCG ATGTTGATAA TGACGGTATG
ATTGATTTAG AACGTGGCGA AGCCGGTTTT AGTATCAAAC AAATGCTGTT TGATGGTTTT
TATACTAGTA GCGAAGTCGA TCGTTATTCG TTTGAAGCTA GTGCTGACCA GTGGGCATTA
TTTGCTGCAG CTGAAGATAT GGCATTGGAT GTTGCAAAGG TCTACTTGAA CTACATCCGT
AGTGAACAAG TATTATTACT TTCCGAGAAA AACCTTGCGA GTCATAAAGA GATTTACGAT
CAAATAAAAC AGCGCACTGA CTCTGGTTTA GGATCAATTG CCGATTTATC GCAAATCACT
GGTCGTCTTG CCCGCGCAAA CGCCAATGTG ATTTCGGCTC AAAACAATTT AGAAGATGCT
CGAGCAGCTT ATATCAGAAT TGTTGAAGCA AAGCCTGATG ACTTAATATT GCCAGTGCCT
GATGCCGATA TGCTACCAAA AAGTTTAGAT AAAGGCCTCA TGGCAGCAAA ATCGAAACAC
CCAGTATTAA AATCAGCAGA AAGCGATATT AATGCCGCAA AAAAAGAGCG TAGCTCAGCC
CAAGCCAACT ATTTTCCACA ATTAAGCCTG GAACTTAATG GTAACTGGAA TAATGATACT
GACGGTGAAG ATGGCTACAG CGCAATTAAC AGCCAAAATG TTAACGGCTA TAACAATGAT
TTAGTTGCTA TGGTTCGAGT TAAATATAAC CTTTTCTCAG GTGGTAAAGA CGTCTCAAAA
GACAGAGAAA CAGCCTATAA AGTCAACGAA GCAAAAGAGA TCCAACAACG TGCTTACCGC
CAAGTTGTTG AGGGTGTTTC TTTAGCTTGG AATGCTTATG AAATGCTAGC CCCACAAAAA
CAGTTCATCC GTGAACATGT TGTGGCAGCA AAGCAGACTC AAGTGGCTTA TGTGCAACAA
TTTAACTTGG GCCAACGTAC TCTGCTCGAT TTGCTCGATA CCGAGAATGA ACTATTTGAA
GCGCGTAAGG ATTACTTGCA AACCGAGTAT GATGAAATTG CAGCTCGCTA TCGAGTATTG
AATGCGACAG GAGATCTACT GGACTCACTT CGAGTTACAC GTCCAGGAGA ATGGCGTGGT
GAGCGTGAAT ATGAGGGAGG TGTTAAATAA
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| Protein sequence | MTTIINQQIK LSAVALALLM LVSPTASSQT LEQAVAHTLD TNPDLRIAFN RFKAREEQVN
QAVAGYMPTV DISAGYGWEQ TDSPSTRRKV GQGDVDNDGM IDLERGEAGF SIKQMLFDGF
YTSSEVDRYS FEASADQWAL FAAAEDMALD VAKVYLNYIR SEQVLLLSEK NLASHKEIYD
QIKQRTDSGL GSIADLSQIT GRLARANANV ISAQNNLEDA RAAYIRIVEA KPDDLILPVP
DADMLPKSLD KGLMAAKSKH PVLKSAESDI NAAKKERSSA QANYFPQLSL ELNGNWNNDT
DGEDGYSAIN SQNVNGYNND LVAMVRVKYN LFSGGKDVSK DRETAYKVNE AKEIQQRAYR
QVVEGVSLAW NAYEMLAPQK QFIREHVVAA KQTQVAYVQQ FNLGQRTLLD LLDTENELFE
ARKDYLQTEY DEIAARYRVL NATGDLLDSL RVTRPGEWRG EREYEGGVK
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