| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0389 |
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| Symbol | |
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| ID | 4278229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 417534 |
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| End bp | 419357 |
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| Gene Length | 1824 bp |
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| Protein Length | 607 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638133143 |
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| Product | LppC family lipoprotein |
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| Protein accession | YP_749090 |
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| Protein GI | 114561577 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3107] Putative lipoprotein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.743997 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTTAAAAA GACTGAATAC TACAAAATTC GTGTGCGCGT TGATTTTCTC TGTATTGGTG
GTTGGTTGTG CCACCAAAAA ACAGCAAGAT AATGTTGACG CTAGCGCATC GCTCGTTGCC
GCTGAACATC CGGCTAAAAT TTATTTAGCC GAGGCAACGA ATAGCAGTTT ACCAGAAAAG
CGTGATCGTT ATTTATTACT CGCCGCTCAT GCTTATATTA ATGATGGTAA CTTTAATTCT
GCCGTTAATG TATTAACGTC AATGCAAAAG TCGATGGTGA ACGTGCCCTC GCTTCAAGCG
GAGCATATTT ATCTGCGCGC TCGCATTGCT GAAAAAACCA ATAGCAGCCA GGCCGCATTA
GATATTTTAC AGTATCCACC ACATTGGCAG CTCCCACGCT GGCAAATGGC AAGTTATCAC
CAATTTAAAG CCAAATTGTA CAAAAATACT CAACAGCCAA TTGACCAAGT TAAGCAATTA
AGCCTATTAA GCAATTACTT GCCAAAGTCT GAAACCACGG CGATCAATAA TGTTATTTGG
AAGCTACTGC AACCACTACA TGAAGAAACC GTGCAGTCGT TTATGCGCGA TCAATCAAAT
CCGATTTTTG CTGGTTGGTT ACAATTAACC TTTATCGCTA AACATTACGC GGTTGAGCCG
ACGCAATTGG TGCGTTATTT AGGTGAGTGG CAGCGTAACA ACCCTTATCA TCCAGGTGCA
GTGAAATTAC CTGCTGATTT AGAAAAAGCC CTCAATGCCA AACCGTTTAG GCCGCAAAAT
ATAGCAGTAT TATTACCGTT AAGTGGCCCA CGCGCTGTGG TTGCTGAACC TATTCGTCAA
GGTCTTATGT CGAGCTATCT GTCTGACTAT GATGCAAATG TGTCAATTAA CTTTTATGAC
ACGCAGCAAG GGGTTGCTGC CGCTTATCAA CAAGCTGTAG CCAAAGGCGC AGAGTTTATC
ATTGGGCCAT TGTTACCCAA TGAAGTTGAA GAACTACAGA AAATCAACGA TAAACAAAAG
ACCACAGTGC CGCAGCTGTA TTTGAACCAA ACGGATACGT TTACGCCACA ACCAAACCTA
TTTTACTTTT CACTGTCACC AGCACAAGAA GCCAGTGATG CAGCACATAA GCTGTATAGC
GATGGCGTAA AGCTGCCACT ACTATTGGCA AGTAACGATC CCATTGGCAA ACGTATGGCC
GACAGTTTTA AGCAAACTTG GCTAACCTTA ACCAGCAATG ATGCCGAAGT GTATTTTTAT
GATGCTGGCG ATCAAATGAA GGTCACAGTT CAAGAAGCAT TAGGTGTGAA AGATAGCCAA
GCACGTATTA GCAGAATGCG TGATTTATTG GGTAGCCGCT TAGAATCAGA TTTTCGTTCT
CGCCAGGATA TTGATGCGAT TTACATGATT TCGGGTTCAC AAGATTTAGC CCTGCTAAAA
CCCTTTTTAG ACGTTAACTT TAGTGTGTTC TCTGAACCGG TAACCTTATA TACCACTAGC
CGTAGCCGTC TTGAAAGCGA GTCAGCGCAG TCGGCACAAG AACTGAATAA CTTGATCATT
AGCGATGTAC CATGGCTAAT GCAATCTAAC AGCGAAACCC AACTGGTGTC TGAGCTATGG
AGTGGTTGGA ATAACAGCCA AAAACGCCTA TACGCAATGG GTTATGATGC GCTTGAATTG
GTTAATCGTT TAGCGCAAAT GCGCGCTTTC CCGGGTTATC AATTTATCGG CCGCAGTGGT
GCATTATCAG TGAAGCCTAA TGGGGTCATT GATCGTCAAC TGTCTTGGGG CAAATATAAC
CAAGGACAAT TAACACCACT ATGA
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| Protein sequence | MLKRLNTTKF VCALIFSVLV VGCATKKQQD NVDASASLVA AEHPAKIYLA EATNSSLPEK
RDRYLLLAAH AYINDGNFNS AVNVLTSMQK SMVNVPSLQA EHIYLRARIA EKTNSSQAAL
DILQYPPHWQ LPRWQMASYH QFKAKLYKNT QQPIDQVKQL SLLSNYLPKS ETTAINNVIW
KLLQPLHEET VQSFMRDQSN PIFAGWLQLT FIAKHYAVEP TQLVRYLGEW QRNNPYHPGA
VKLPADLEKA LNAKPFRPQN IAVLLPLSGP RAVVAEPIRQ GLMSSYLSDY DANVSINFYD
TQQGVAAAYQ QAVAKGAEFI IGPLLPNEVE ELQKINDKQK TTVPQLYLNQ TDTFTPQPNL
FYFSLSPAQE ASDAAHKLYS DGVKLPLLLA SNDPIGKRMA DSFKQTWLTL TSNDAEVYFY
DAGDQMKVTV QEALGVKDSQ ARISRMRDLL GSRLESDFRS RQDIDAIYMI SGSQDLALLK
PFLDVNFSVF SEPVTLYTTS RSRLESESAQ SAQELNNLII SDVPWLMQSN SETQLVSELW
SGWNNSQKRL YAMGYDALEL VNRLAQMRAF PGYQFIGRSG ALSVKPNGVI DRQLSWGKYN
QGQLTPL
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