| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0178 |
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| Symbol | |
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| ID | 4277580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 186671 |
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| End bp | 187357 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638132928 |
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| Product | heme exporter protein CcmB |
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| Protein accession | YP_748879 |
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| Protein GI | 114561366 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG2386] ABC-type transport system involved in cytochrome c biogenesis, permease component |
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| TIGRFAM ID | [TIGR01190] heme exporter protein CcmB |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAACGAG GAATTAGTTA CACAACAGCA TTCATGACGC TTTTGCAACG TGATTTGAGA
ATTGCTATTC GACATCGAGG TGACATTTTT AACCCGTTGT TATTCTTTAT TTTAGTGGTC
ACTCTTTTCC CATTAGGTAT TGGACCAGAA CCTCAAGTTT TGACTAGAGT TGCACCTGGC
ATTATCTGGG TAGCGGCCTT ACTTGCATCG ATGTTGTCAT TGGAACGTTT ATTTAAAGCA
GATTACAACG ATGGTAGCTT AGAGCAAATG CTACTGAGCC CACAACCGTT AGCATTAATG
GTTCTGGCGA AAGTACTTGC ACATTGGATA CTTACTGGTG TGCCATTAAT TCTAGTCGCA
CCATTACTGG CTGTACTGTT GCATCTAGAA GACAATAGTT ACGGTGCATT GATGTCAACA
TTAGCATTAG GTACACCGAT ATTGTCGTTA CTTGGTGCAA TAGGTGTTGC ACTAACAGTA
GGACTTCGAA AAGGAGGCGT GCTGTTAAGT TTACTTATTC TACCTTTATA TATACCTGTA
CTTATTTTTG CCACTAGTGC GATTGACGCT GCAGGACTGA ATATGGCTTA TGATGGTCAA
CTTGCGATTC TTGCTGCAAT GTTGGTCGGT TCTTTAATCT TGGCACCTTT CGCAATTGGC
GCCTCTTTAC GTGTGAGCAC AAACTAA
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| Protein sequence | MKRGISYTTA FMTLLQRDLR IAIRHRGDIF NPLLFFILVV TLFPLGIGPE PQVLTRVAPG
IIWVAALLAS MLSLERLFKA DYNDGSLEQM LLSPQPLALM VLAKVLAHWI LTGVPLILVA
PLLAVLLHLE DNSYGALMST LALGTPILSL LGAIGVALTV GLRKGGVLLS LLILPLYIPV
LIFATSAIDA AGLNMAYDGQ LAILAAMLVG SLILAPFAIG ASLRVSTN
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