Gene Sfri_0173 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0173 
Symbol 
ID4277243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp182753 
End bp183742 
Gene Length990 bp 
Protein Length329 aa 
Translation table11 
GC content46% 
IMG OID638132923 
ProductDNA-directed RNA polymerase subunit alpha 
Protein accessionYP_748874 
Protein GI114561361 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000000597104 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGGGTT CTGTTACAGA ATTTCTTAAA CCGCGTCTCG TTGATATTGA GCAGGTTAAT 
TCAACTCGCG CCAAAGTTAC ACTAGAGCCA CTAGAACGTG GTTTTGGCCA TACCTTAGGT 
AACGCGTTGC GTCGCATCCT ATTGTCGTCT ATGCCTGGCT GTGCAGTTAC TGAAGTCGAA 
ATTGACGGCG TACTGCATGA ATACAGCAGT AAGGAAGGCG TACAAGAAGA TATCCTTGAG 
ATATTGCTTA ATCTTAAGGG ATTAGCAGTG ACCATCGAGG GTAAAGACGA GGCTTTGCTT 
ACATTAAGCA AGTCCGGCAC AGGCCCTGTT ACAGCAGCAG ATATCACGCA TGATGGTGAT 
GTTACCATCG TGAATCCTGA TCATGTTATC TGTCACTTGA CTGGTAACAA TGATATCAGC 
ATGCGTATCC GCGTTGAGCG TGGTCGTGGT TATGTGCCAG CTTCGGCTCG TGCACAGACT 
GAAGACGATG ATCGCCCAAT CGGTCGTTTG CTGGTTGATG CTTCTTTTTC ACCTGTTGCT 
CGCATTGCTT ATAATGTTGA AGCAGCTCGT GTTGAACAGC GTACTGACTT AGACAAACTT 
GTGATAGATA TGACCACAAA CGGTACTATC GATCCTGAGG AAGCAATTCG TCGTTCTGCA 
ACTATTTTAG CTGAACAGCT AGATGCGTTT GTTGAACTAC GTGATGTTAC TGAGCAGGCT 
GTTGTAGAAG AGAAACCGGA GTTCGATCCG ATTTTGCTGC GTCCTGTCGA CGATTTAGAG 
CTAACTGTAC GTTCGGCTAA CTGTTTAAAA GCCGAAGCGA TTCATTACAT CGGAGATCTG 
GTACAACGCA CTGAAGTTGA GTTGCTTAAG ACCCCTAACT TAGGTAAGAA ATCTCTTACT 
GAAATTAAGG ATGTTTTAGC GTCTCGCGGA CTGTCGTTAG GTATGCGTCT AGAAAACTGG 
CCACCGGCTA GTTTAGCTGA CGACCTATAA
 
Protein sequence
MQGSVTEFLK PRLVDIEQVN STRAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE 
IDGVLHEYSS KEGVQEDILE ILLNLKGLAV TIEGKDEALL TLSKSGTGPV TAADITHDGD 
VTIVNPDHVI CHLTGNNDIS MRIRVERGRG YVPASARAQT EDDDRPIGRL LVDASFSPVA 
RIAYNVEAAR VEQRTDLDKL VIDMTTNGTI DPEEAIRRSA TILAEQLDAF VELRDVTEQA 
VVEEKPEFDP ILLRPVDDLE LTVRSANCLK AEAIHYIGDL VQRTEVELLK TPNLGKKSLT 
EIKDVLASRG LSLGMRLENW PPASLADDL