| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_0114 |
|---|
| Symbol | |
|---|
| ID | 4277184 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 127753 |
|---|
| End bp | 128229 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638132855 |
|---|
| Product | general secretion pathway M protein |
|---|
| Protein accession | YP_748815 |
|---|
| Protein GI | 114561302 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3149] Type II secretory pathway, component PulM |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAACA TGCGTAGTTG GTGGCAAGGT TTAGCCATTA GAGAACAACA ACTTGTTGGT
TTTTGTGCCG CAGTATTGGC AATTGGCATT ATGTATTGGG GCATTTGGAC ACCCATTTCG
AATGCTCAAG ATACCGCCGA ACGTGATAAC AGCGCAGCGC AACAAACGTT AAATTATGTT
AAACAAACCG CCAATAAAAT AGCGGGTCTG AAGCAAGCGG GTGCGCAAGC TAAAGTCCGT
GGCAGTTTAA GTTCTGTGGT AAATCAAACG GCCGGACAAT ATAAATTAGA GATCACCCGT
ATGCAGCCGC AAGGCGATAA AATTCAGCTA TGGATGGATG ACGTGCCATT TGATGCGTTA
CTGGGTTACT TACATGACTT AGTAGAGCAA AAGGGCTTAA CGTTAGACAG CGTAGATCTA
ACCGAATCAG ACGTTGCTGG CTTTGTAAAA GTAAGACGTA TTCAGCTTTC TCAGTAA
|
|---|
| Protein sequence | MENMRSWWQG LAIREQQLVG FCAAVLAIGI MYWGIWTPIS NAQDTAERDN SAAQQTLNYV
KQTANKIAGL KQAGAQAKVR GSLSSVVNQT AGQYKLEITR MQPQGDKIQL WMDDVPFDAL
LGYLHDLVEQ KGLTLDSVDL TESDVAGFVK VRRIQLSQ
|
|---|
| |