Gene Sfri_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_0028 
Symbol 
ID4278305 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp32909 
End bp33472 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content44% 
IMG OID638132766 
ProductDNA topoisomerase type IA Zn finger domain-containing protein 
Protein accessionYP_748729 
Protein GI114561216 
COG category[L] Replication, recombination and repair 
COG ID[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCGAAAA TTGATCAGCA ACTTTTTACT GTCCACGAAC ATGCATTGGA GAAAGAGTTT 
GAACTTTGTC CTGTTTGTGG TGCTGAGTTG TCGGTTAAAC ACAGTAAACA TGGCAGTTTT 
GTGGGCTGTA ATAACTATCC AACCTGCGAT TATGCCCGTC CGCTAGTGCA GCATGAGTCG 
ATTGAAACCC AAATTATTAG CGGTTCTGAA TGCCCTAAAT GTGGTAATGA GTTGGCTGTT 
AAGTCTGGTC GATTTGGTAT TTTTATCGGC TGTACGCATT ATCCTGAATG TACCCACATT 
GAAAAACATG ACCACGCCAA CGAAGCTGAG CAGATAACTT GCCCACTGTG TAAAAAAGGC 
CATCTAGAGT CTCGTACTAG CCGGTATGGC AAAACTTTTT TTGCATGTAG TGCCTACCCA 
AAATGCAAGT TTATCGTAAA CTACCCTCCA CATAATGAAG CATGCCCAGA GTGTGGCTTC 
GGCATTTTAG TCGAGCGTAA AGGTGCGGCT GGTAGCCGAG TCGAGTGTCC GCAAAAATCC 
TGTAAATATA AGCGTGCTTT ATAA
 
Protein sequence
MSKIDQQLFT VHEHALEKEF ELCPVCGAEL SVKHSKHGSF VGCNNYPTCD YARPLVQHES 
IETQIISGSE CPKCGNELAV KSGRFGIFIG CTHYPECTHI EKHDHANEAE QITCPLCKKG 
HLESRTSRYG KTFFACSAYP KCKFIVNYPP HNEACPECGF GILVERKGAA GSRVECPQKS 
CKYKRAL