Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeSA_A4365 |
Symbol | rpoC |
ID | 6518476 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 |
Kingdom | Bacteria |
Replicon accession | NC_011094 |
Strand | + |
Start bp | 4237337 |
End bp | 4241560 |
Gene Length | 4224 bp |
Protein Length | 1407 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642749318 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_002117057 |
Protein GI | 194733939 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.73756 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAGATT TATTAAAGTT TCTGAAAGCG CAGACTAAAA CCGAAGAGTT TGATGCGATC AAAATTGCTC TGGCTTCGCC AGACATGATC CGTTCATGGT CTTTCGGTGA AGTTAAAAAG CCGGAAACCA TCAACTACCG TACGTTCAAA CCTGAGCGTG ACGGCCTTTT CTGCGCCCGT ATCTTTGGGC CGGTAAAAGA CTACGAGTGC CTGTGCGGTA AGTACAAGCG CCTGAAACAC CGTGGTGTTA TTTGTGAGAA GTGCGGCGTT GAAGTGACCC AGACCAAAGT ACGCCGTGAG CGTATGGGCC ACATTGAGCT GGCGTCTCCG ACTGCTCACA TCTGGTTCCT GAAATCGCTG CCGTCCCGTA TCGGTCTGCT GCTCGATATG CCGTTGCGTG ATATCGAACG CGTACTGTAC TTCGAATCTT ATGTGGTTAT CGAAGGCGGT ATGACCAACC TGGAACGTCA ACAGATCCTG ACTGAAGAAC AGTATCTGGA CGCGCTGGAA GAGTTCGGTG ACGAATTCGA CGCGAAGATG GGTGCGGAAG CTATCCAGGC CCTGCTGAAG AGCATGGATC TGGAGCAAGA GTGTGAAACT CTGCGCGAAG AGCTGAACGA AACCAACTCC GAAACCAAGC GTAAGAAGCT GACCAAGCGT ATCAAACTGC TGGAAGCCTT CGTACAGTCT GGCAACAAGC CAGAGTGGAT GATCCTGACC GTTCTGCCGG TTCTGCCGCC AGATCTGCGT CCGCTGGTTC CGCTGGATGG TGGTCGTTTC GCCACGTCAG ATCTGAACGA TCTGTATCGT CGCGTCATTA ACCGTAACAA CCGTCTGAAG CGTCTGCTGG ATCTGGCTGC GCCGGACATC ATCGTACGCA ACGAAAAACG TATGCTGCAG GAAGCGGTTG ACGCCCTGCT GGATAACGGT CGTCGCGGTC GTGCGATCAC CGGTTCTAAC AAGCGTCCTC TGAAATCTTT GGCCGACATG ATCAAAGGTA AACAGGGTCG TTTCCGTCAG AACCTGCTCG GTAAGCGTGT TGACTACTCC GGTCGTTCTG TTATCACCGT AGGTCCATAC CTGCGTCTGC ACCAGTGCGG TCTGCCGAAG AAAATGGCGC TGGAGCTGTT TAAACCGTTC ATCTACGGCA AGCTGGAACT GCGTGGCCTT GCCACCACCA TCAAAGCCGC GAAAAAAATG GTTGAGCGCG AAGAAGCTGT CGTTTGGGAT ATCCTGGACG AAGTGATCCG CGAACACCCG GTACTGCTGA ACCGTGCGCC GACTCTGCAC CGTCTGGGTA TCCAGGCCTT TGAACCGGTT CTGATCGAAG GTAAAGCTAT CCAGCTGCAC CCGCTGGTCT GTGCGGCATA TAACGCCGAC TTCGATGGTG ACCAGATGGC TGTTCACGTA CCGCTGACGC TGGAAGCCCA GCTTGAAGCG CGTGCGCTGA TGATGTCTAC CAACAACATC CTGTCTCCGG CGAACGGCGA ACCTATCATC GTTCCGTCTC AGGACGTGGT ATTGGGTCTG TACTACATGA CCCGTGACTG TGTTAACGCC AAAGGCGAAG GCATGGTGCT GACTGGCCCG AAAGAAGCTG AGCGTATCTA TCGCGCAGGT CTGGCCTCTC TGCATGCGCG CGTTAAAGTG CGTATCACTG AATATGAAAA AGATGAAAAC GGCGAATTCG TTGCGCACAC CAGCCTGAAA GACACGACCG TTGGTCGCGC CATTCTGTGG ATGATCGTAC CGAAAGGTCT GCCTTTCTCC ATCGTCAACC AGGCGCTGGG CAAGAAAGCG ATCTCCAAAA TGCTGAACAC TTGCTACCGT ATTCTGGGTC TGAAACCGAC CGTTATTTTT GCGGACCAGA CGATGTACAC CGGCTTTGCT TATGCAGCGC GTTCAGGTGC GTCCGTTGGT ATTGATGACA TGGTCATCCC GGAGAAAAAA CACGAGATCA TCTCTGAGGC GGAAGCTGAA GTTGCCGAGA TCCAGGAGCA GTTCCAGTCC GGTCTGGTAA CCGCTGGCGA ACGCTATAAC AAAGTTATCG ATATCTGGGC TGCGGCGAAC GATCGTGTAT CCAAAGCGAT GATGGATAAC CTGCAAACCG AAACCGTGAT TAACCGTGAC GGCCAGGAAG AGCAGCAGGT TTCCTTCAAC AGCATCTACA TGATGGCCGA CTCCGGTGCG CGTGGTTCTG CGGCACAGAT TCGTCAGCTG GCCGGTATGC GTGGTCTGAT GGCGAAGCCG GATGGCTCCA TCATCGAAAC GCCAATCACT GCGAACTTCC GTGAAGGTCT GAACGTACTC CAGTACTTCA TCTCCACGCA CGGTGCGCGT AAAGGTCTGG CGGATACCGC ACTGAAAACC GCGAACTCCG GTTACCTGAC TCGTCGTCTG GTTGACGTCG CGCAGGATCT GGTGGTGACC GAAGATGACT GTGGTACGCA CGAAGGTATC CTGATGACCC CGGTTATCGA GGGTGGCGAC GTGAAAGAGC CGCTGCGTGA CCGCGTTCTG GGCCGTGTGA CAGCGGAAGA TGTGCTGAAA CCGGGTACCG CGGACATTCT GGTTCCACGC AACACGCTGC TGCACGAACA GTGGTGTGAC CTGCTGGAAG CAAACTCCGT TGACGCCGTT AAAGTGCGTT CCGTTGTATC CTGCGACACC GACTTTGGTG TATGTGCGCA CTGCTATGGT CGTGACCTGG CGCGTGGCCA CATCATCAAC AAAGGTGAAG CTATCGGCGT TATCGCGGCA CAGTCCATCG GTGAACCGGG TACACAGCTG ACGATGCGTA CGTTCCACAT CGGTGGTGCG GCATCGCGTG CGGCTGCTGA ATCCAGCATC CAGGTGAAAA ATAAAGGTAG CATCAAGCTC AGCAACGTGA AGTCGGTTGT GAACTCCAGC GGTAAACTGG TTATCACTTC TCGTAACACC GAACTGAAGC TGATCGACGA ATTCGGTCGT ACCAAAGAGA GCTATAAAGT ACCTTATGGC GCTGTCATGG CGAAAGGTGA TGGCGAGCAG GTTGCCGGCG GCGAAACCGT GGCAAACTGG GACCCGCACA CCATGCCGGT TATCACCGAA GTGAGTGGTT TCATCCGCTT CACTGACATG ATCGACGGTC AGACCATTAC GCGTCAGACC GACGAACTGA CCGGTTTGTC TTCGCTGGTG GTTCTGGATT CGGCTGAACG TACTACTGGT GGTAAGGATC TGCGTCCGGC GCTGAAAATC GTTGATGCTC AGGGTAATGA CGTGCTGATC CCCGGTACCG ATATGCCTGC GCAGTACTTC CTGCCGGGTA AAGCGATTGT ACAGCTGGAA GATGGCGTAC AGATCAGTTC TGGTGACACC CTGGCGCGTA TTCCGCAGGA ATCCGGCGGT ACCAAGGATA TCACCGGTGG TCTGCCGCGC GTTGCGGACC TGTTCGAAGC GCGTCGTCCG AAAGAGCCGG CAATCCTTGC TGAAATCGCA GGTATCGTTT CCTTCGGTAA AGAAACCAAA GGCAAACGTC GTCTGGTGAT TACGCCGGTT GATGGTAGTG ACCCGTACGA AGAGATGATT CCGAAATGGC GTCAGCTCAA CGTGTTCGAA GGGGAACGTG TAGAACGTGG TGATGTGATT TCCGATGGTC CGGAAGCGCC GCACGACATT CTGCGTCTGC GTGGCGTTCA TGCTGTGACG CGTTACATTG TTAACGAAGT TCAGGATGTA TACCGTCTGC AGGGCGTTAA GATTAACGAT AAACACATCG AAGTTATCGT TCGTCAGATG CTGCGTAAAG CGACCATCGA AAGCGCCGGT AGTTCCGACT TCCTGGAAGG CGAACAGGTT GAATACTCTC GCGTCAAGAT CGCTAATCGC GAGCTGGAAG CGAACGGCAA AGTGGGGGCT ACCTTCTCCC GCGATCTGCT GGGTATCACC AAAGCGTCTC TGGCAACCGA ATCGTTCATC TCTGCCGCAT CGTTCCAGGA GACCACGCGT GTCCTGACCG AAGCAGCCGT TGCGGGCAAA CGCGACGAAC TGCGCGGCCT GAAAGAGAAC GTTATCGTGG GTCGTCTGAT TCCGGCCGGT ACCGGTTATG CGTACCACCA GGATCGTATG CGCCGTCGCG CCGCAGGCGA GCAGCCAGCA GCACCGCAGG TCACTGCGGA AGATGCATCT GCCAGCCTGG CAGAACTGCT GAACGCAGGT CTGGGCGGTT CTGATAACGA GTAA
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Protein sequence | MKDLLKFLKA QTKTEEFDAI KIALASPDMI RSWSFGEVKK PETINYRTFK PERDGLFCAR IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP TAHIWFLKSL PSRIGLLLDM PLRDIERVLY FESYVVIEGG MTNLERQQIL TEEQYLDALE EFGDEFDAKM GAEAIQALLK SMDLEQECET LREELNETNS ETKRKKLTKR IKLLEAFVQS GNKPEWMILT VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPY LRLHQCGLPK KMALELFKPF IYGKLELRGL ATTIKAAKKM VEREEAVVWD ILDEVIREHP VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTRDCVNA KGEGMVLTGP KEAERIYRAG LASLHARVKV RITEYEKDEN GEFVAHTSLK DTTVGRAILW MIVPKGLPFS IVNQALGKKA ISKMLNTCYR ILGLKPTVIF ADQTMYTGFA YAARSGASVG IDDMVIPEKK HEIISEAEAE VAEIQEQFQS GLVTAGERYN KVIDIWAAAN DRVSKAMMDN LQTETVINRD GQEEQQVSFN SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNVL QYFISTHGAR KGLADTALKT ANSGYLTRRL VDVAQDLVVT EDDCGTHEGI LMTPVIEGGD VKEPLRDRVL GRVTAEDVLK PGTADILVPR NTLLHEQWCD LLEANSVDAV KVRSVVSCDT DFGVCAHCYG RDLARGHIIN KGEAIGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAESSI QVKNKGSIKL SNVKSVVNSS GKLVITSRNT ELKLIDEFGR TKESYKVPYG AVMAKGDGEQ VAGGETVANW DPHTMPVITE VSGFIRFTDM IDGQTITRQT DELTGLSSLV VLDSAERTTG GKDLRPALKI VDAQGNDVLI PGTDMPAQYF LPGKAIVQLE DGVQISSGDT LARIPQESGG TKDITGGLPR VADLFEARRP KEPAILAEIA GIVSFGKETK GKRRLVITPV DGSDPYEEMI PKWRQLNVFE GERVERGDVI SDGPEAPHDI LRLRGVHAVT RYIVNEVQDV YRLQGVKIND KHIEVIVRQM LRKATIESAG SSDFLEGEQV EYSRVKIANR ELEANGKVGA TFSRDLLGIT KASLATESFI SAASFQETTR VLTEAAVAGK RDELRGLKEN VIVGRLIPAG TGYAYHQDRM RRRAAGEQPA APQVTAEDAS ASLAELLNAG LGGSDNE
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