Gene SeSA_A1492 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeSA_A1492 
Symbol 
ID6515242 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 
KingdomBacteria 
Replicon accessionNC_011094 
Strand+ 
Start bp1445855 
End bp1447054 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content43% 
IMG OID642746604 
Producttype III secretion apparatus protein, YscD/HrpQ family 
Protein accessionYP_002114409 
Protein GI194734685 
COG category 
COG ID 
TIGRFAM ID[TIGR02500] type III secretion apparatus protein, YscD/HrpQ family 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.519632 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTAATC CAAAGAGCTC ATGGAAAATA CGTTTTTTAG GTCACGTTTT ACAAGGCCGG 
GAAGTATGGC TGAATGAAGG TAACCTGTCA CTGGGGGAGA AAGGATGCGA TATTTGTATT 
CCGCTTACTA TAAATGAAAA AATTATTCTG AGAGAACAGG CAGATAGTTT ATTTGTTGAT 
GCCGGGAAAG CCAGAGTTAA AGTTAACGGC CGCAGATTTA ATCCAAATAA GCCGCTACCA 
TCCAGTGGGG TTTTGCAGGT TGCGGGAGTG GCTATCGCGT TTGGTAAACA GGATTGTGAA 
CTTGCTGATT ATCAAATACC CGTTTCCAGA TCAGGGTACT GGTGGTTGGC TGGCGTATTC 
TTGATTTTCA TCGGTGGAAT GGGGGTCCTG TTAAGTATTG GCGGTCAGCC TGAAACGGTA 
AATGACTTAC CTTTGCGGGT TAAGTTTTTA TTAGACAAAA GCAATATTCA TTATGTGCGG 
GCGCAATGGA AAGAAGATGG CAGCCTGCAG TTGTCCGGTT ATTGCTCGTC AAGCGAACAG 
ATGCAAAAGG TGAGAGCGAC TCTCGAATCA TGGGGGGTCA TGTATCGGGA TGGTGTAATC 
TGTGATGACT TATTGGTACG AGAAGTGCAG GATGTTTTGA TAAAAATGGG TTACCCGCAT 
GCTGAAGTAT CCAGCGAAGG GCCGGGAAGC GTGTTAATTC ATGATGATAT ACAAATGGAT 
CAGCAATGGC GTAAGGTTCA ACCATTACTT GCAGATATTC CCGGGTTATT GCACTGGCAG 
ATTAGTCATT CTCATCAGTC TCAGGGGGAT GATATTATTT CTGCGATAAT AGAGAACGGT 
TTAGTGGGGC TTGTCAATGT TACGCCAATG CGGCGCTCTT TTGTTATCAG TGGTGTACTG 
GATGAATCTC ATCAACGCAT TTTGCAAGAA ACGTTAGCAG CATTAAAGAA AAAGGACCCC 
GCTCTTTCTT TAATTTATCA GGATATTGCG CCTTCTCATG ATGAAAGCAA GTATCTGCCT 
GCGCCAGTGG CTGGCTTTGT ACAGAGTCGC CATGGTAATT ACTTATTACT GACGAATAAA 
GAGCGTTTAC GTGTAGGGGC ATTATTACCC AATGGGGGAG AAATTGTCCA TCTGAGTGCC 
GATGTGGTAA CGATTAAACA TTATGATACT TTGATTAACT ATCCATTAGA TTTTAAGTGA
 
Protein sequence
MVNPKSSWKI RFLGHVLQGR EVWLNEGNLS LGEKGCDICI PLTINEKIIL REQADSLFVD 
AGKARVKVNG RRFNPNKPLP SSGVLQVAGV AIAFGKQDCE LADYQIPVSR SGYWWLAGVF 
LIFIGGMGVL LSIGGQPETV NDLPLRVKFL LDKSNIHYVR AQWKEDGSLQ LSGYCSSSEQ 
MQKVRATLES WGVMYRDGVI CDDLLVREVQ DVLIKMGYPH AEVSSEGPGS VLIHDDIQMD 
QQWRKVQPLL ADIPGLLHWQ ISHSHQSQGD DIISAIIENG LVGLVNVTPM RRSFVISGVL 
DESHQRILQE TLAALKKKDP ALSLIYQDIA PSHDESKYLP APVAGFVQSR HGNYLLLTNK 
ERLRVGALLP NGGEIVHLSA DVVTIKHYDT LINYPLDFK