| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C3195 |
|---|
| Symbol | csdA |
|---|
| ID | 6489375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | + |
|---|
| Start bp | 3118595 |
|---|
| End bp | 3119800 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642743337 |
|---|
| Product | cysteine sulfinate desulfinase |
|---|
| Protein accession | YP_002046956 |
|---|
| Protein GI | 194451539 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily
[TIGR03392] cysteine desulfurase, catalytic subunit CsdA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.364366 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 84 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCTT TTAATCCCAC GCAGTTTCGC GCGCAGTTTC CCGCGCTAGC CGATGCGGGT
GTTTATCTCG ATAGCGCCGC CACGGCATTA AAGCCACAGG CAGTCATTGA CGCCACGCAC
CAGTTTTATT GTTTGAGCGC CGGTAACGTT CATCGTAGCC AGTTTGCGCA GGCGCAGCGC
CTGACGGCGC AATATGAAGC GGCCAGAGCA AAAGCAGCAC GACTGTTAAA CGCGCCCGAT
GAAAAAAGTA TCGTCTGGAC ACGCGGCACC ACCGAAGCGA TCAACATGGT GGCGCAGTGT
TACGCCCGTC CTCGTCTGCG CCCCGGCGAT GAAATTATCG TTAGCGTCGC CGAGCATCAC
GCCAACCTTG TGCCCTGGCT GATGGTGGCG CAACAAACCG GCGCGCAGGT CATAAAACTG
CCGCTTAATG ACCGGCGTCT TCCTGATGTT GAGCGTCTGC CGGAACTGAT CACGTCGCGC
AGCCGGATTC TGGCGCTGGG GCAAATGTCG AACGTAACGG GCGGCTGTCC GGATCTCGCA
AGCGCTATCA GCGCCGCTCA CGCGGCGGGA ATGGTCGTGA TGGTAGATGG CGCGCAAGGC
GCGGTACACT TCCCGGCGGA TGTTCAGCAG CTTGATATCG ATTTTTATGC TTTTTCCGCT
CACAAACTGT ATGGCCCGAC CGGTATCGGC GTGCTGTACG GTAAGCCGGA GCTTCTTGAG
GCGATGTCGC CCTGGCTCGG CGGCGGCAAG ATGATCCGTG ACGTTAGCTT TGAAGGCTTC
ACCACTCAAA GCGCTCCCTG GAAGCTGGAA GCGGGGACGC CGAACGTCGC CGGGGTCATC
GGCCTGAGCG CTGCGCTGGA ATGGCTGTCC GATATCGATA TTGAACAGGC CGAAAACTGG
AGCCGGGGGC TGGCGACGCT GGCGGAAGAC GCACTGGCGA AACGCCCGGG CTTTCGTTCG
TTCCGCTGCC AGGACTCCAG CCTGCTGGCC TTTGATTTTG TCGGCGTGCA CCACGGCGAT
ATGGTGACGC TGCTGGCGGA ATACGGTATT GCGCTCCGGG CCGGGCAACA TTGCGCCCAG
CCATTGCTGG CGGAACTTGG CGTCACAGGG ACTCTGCGCG CCTCTTTTGC GCCGTATAAT
ACCCAACATG ATGTGGATGC GTTGGTTAAC GCCGTTGACC GCGCGCTGGA ACTGCTGGTG
GATTAA
|
|---|
| Protein sequence | MNAFNPTQFR AQFPALADAG VYLDSAATAL KPQAVIDATH QFYCLSAGNV HRSQFAQAQR
LTAQYEAARA KAARLLNAPD EKSIVWTRGT TEAINMVAQC YARPRLRPGD EIIVSVAEHH
ANLVPWLMVA QQTGAQVIKL PLNDRRLPDV ERLPELITSR SRILALGQMS NVTGGCPDLA
SAISAAHAAG MVVMVDGAQG AVHFPADVQQ LDIDFYAFSA HKLYGPTGIG VLYGKPELLE
AMSPWLGGGK MIRDVSFEGF TTQSAPWKLE AGTPNVAGVI GLSAALEWLS DIDIEQAENW
SRGLATLAED ALAKRPGFRS FRCQDSSLLA FDFVGVHHGD MVTLLAEYGI ALRAGQHCAQ
PLLAELGVTG TLRASFAPYN TQHDVDALVN AVDRALELLV D
|
|---|
| |