Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C1877 |
Symbol | pspF |
ID | 6489016 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | + |
Start bp | 1830384 |
End bp | 1831379 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642742090 |
Product | phage shock protein operon transcriptional activator |
Protein accession | YP_002045735 |
Protein GI | 194449165 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
TIGRFAM ID | [TIGR02974] psp operon transcriptional activator PspF |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.436401 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 54 |
Fosmid unclonability p-value | 0.0112899 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCGATTT TCATCATGGC TGAATTTAAA GATAACCTGC TCGGCGAGGC AAACCGTTTT CTTGAAGTAC TGGAACAAGT CTCCCGGCTC GCGCCGCTGG ATAAGCCAGT ACTGATTATT GGCGAACGCG GTACGGGTAA AGAACTTATC GCCAATCGCC TGCACTATCT CTCTTCACGC TGGCAGGGGC CGCTTATCTC GCTTAACTGC GCAGCGCTTA ACGAAAATCT GCTGGACTCC GAACTGTTTG GTCATGAAGC GGGTGCTTTT ACCGGGGCGC AAAAACGCCA TCCCGGTCGC TTTGAACGCG CCGATGGCGG CACGCTGTTT TTGGATGAAC TGGCGACAGC GCCGATGCTG GTACAGGAAA AGCTGCTGCG AGTGATTGAA TATGGCGAGC TAGAGCGCGT CGGCGGCAGC CAGCCGTTAC AGGTTAATGT GCGATTAGTA TGCGCCACTA ATGCCGATTT ACCCGCCATG GTGAAGGAAG GGACATTTCG TGCCGATCTG CTCGACAGGC TGGCTTTTGA TGTTGTACAA CTGCCGCCGC TGCGCGAACG CCAGAGCGAT ATCATGCTGA TGGCCGAGCA TTTTGCTATT CAGATGTGTC GTGAACTACG TCTGCCCTTA TTTCCCGGTT TTACCGATCG GGCAAAAGAA ACGTTGTTGC ATTACGCCTG GCCGGGTAAT GTCCGCGAGC TGAAAAACGT AGTCGAACGT TCAGTGTATC GCCACGGCAG CAGTGAACAT CCTTTGGATG AAATTGTTAT CGATCCTTTT CAACGCCATC CCGCTGAACC GCCCGCGCCC GCCCTGCCAG CGGCATCCGT CACGCCTGAC CTGCCGCTCA AATTACGTGC GTTTCAACTG CAACAGGAAA AAGCGCTGCT GCAACGTAGC TTACAGCAGG CGAAATTTAA CCAGAAACGA GCCGCCGATT TGCTGGCGCT CACCTACCAC CAGTTTCGCG CCTTGCTTAA AAAGCATCAG CTTTAG
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Protein sequence | MAIFIMAEFK DNLLGEANRF LEVLEQVSRL APLDKPVLII GERGTGKELI ANRLHYLSSR WQGPLISLNC AALNENLLDS ELFGHEAGAF TGAQKRHPGR FERADGGTLF LDELATAPML VQEKLLRVIE YGELERVGGS QPLQVNVRLV CATNADLPAM VKEGTFRADL LDRLAFDVVQ LPPLRERQSD IMLMAEHFAI QMCRELRLPL FPGFTDRAKE TLLHYAWPGN VRELKNVVER SVYRHGSSEH PLDEIVIDPF QRHPAEPPAP ALPAASVTPD LPLKLRAFQL QQEKALLQRS LQQAKFNQKR AADLLALTYH QFRALLKKHQ L
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