Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C1547 |
Symbol | |
ID | 6488985 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | + |
Start bp | 1499171 |
End bp | 1501216 |
Gene Length | 2046 bp |
Protein Length | 681 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 642741770 |
Product | secretion system apparatus protein SsaV |
Protein accession | YP_002045417 |
Protein GI | 194451914 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4789] Type III secretory pathway, component EscV |
TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.234827 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 77 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTCAT GGTTAGGTGA GGGAGTCAGG GCGCAACAGT GGCTCAGTGT ATGCGCGGGT CGGCAGGATA TGGTTCTGGC GACGGTGTTA TTAATCGCTA TTGTGATGAT GCTGTTACCT TTGCCGACCT GGATGGTTGA TATCCTGATT ACTATCAACC TTATGTTTTC AGTGATCCTG CTCTTAATTG CTATTTATCT TAGTGACCCT CTCGATTTAT CGGTATTTCC GTCTTTATTA CTTATTACTA CATTATATCG TTTGTCACTC ACAATCAGCA CATCACGGCT GGTACTGTTA CAACATAATG CCGGTAATAT TGTGGATGCT TTCGGTAAGT TTGTCGTAGG AGGAAATCTC ACCGTTGGGT TGGTCGTATT TACCATCATT ACTATCGTGC AATTTATTGT CATTACAAAA GGTATCGAGA GGGTGGCGGA AGTTAGCGCA CGTTTCTCGC TTGATGGGAT GCCAGGCAAA CAAATGAGTA TCGATGGCGA TTTGCGTGCC GGAGTTATCG ATGCAGACCA TGCCCGTACA TTAAGACAGC ATGTCCAGCA GGAAAGCCGC TTTCTCGGTG CGATGGACGG TGCGATGAAA TTTGTTAAAG GCGATACGAT TGCCGGTATT ATTGTTGTTC TGGTGAACAT TATCGGCGGT ATCATTATCG CTATCGTACA ATATGATATG TCGATGAGTG AGGCTGTTCA CACTTATAGC GTACTGTCAA TCGGAGATGG TTTATGTGGG CAAATTCCAT CGCTGCTGAT TTCCCTTAGC GCGGGAATTA TTGTCACCCG TGTCCCGGGT GAGAAACGCC AGAACCTGGC GACAGAGTTG AGTTCTCAAA TTGCCAGACA ACCTCAGTCG CTCATATTAA CCGCTGTGGT TTTAATGCTC CTCGCTTTAA TTCCTGGCTT TCCTTTTATC ACTCTCGCTT TCTTTTCAGC GTTGTTAGCA TTGCCAATTA TCCTCATTCG CCGCAAAAAG TCTGTGGTTT CCGCAAATGG CGTCGAAGCA CCGGAAAAAG ATAGTATGGT TCCCGGCGCA TGTCCTCTAA TCTTACGTCT TAGCCCGACG TTACATTCTG CCGACCTGAT TCGTGATATT GACGCCATGA GATGGTTTTT ATTTGAGGAT ACCGGCGTCC CTCTCCCTGA GGTGAATATT GAGGTTTTGC CTGAACCCAC CGAAAAATTG ACGGTACTGC TATATCAGGA ACCCGTATTT AGTTTATCTA TTCCCGCTCA GGCGGATTAT TTATTGATAG GCGCGGACGC TAGTGTGGTG GGTGACAGCC AGACGTTACC GAACGGGATG GGGCAGATCT GTTGGCTTAC AAAAGACATG GCCCATAAGG CGCAAGGTTT TGGACTGGAC GTTTTCGCGG GCAGCCAACG TATCTCTGCC TTATTAAAAT GTGTCCTGCT TCGGCATATG GGAGAGTTTA TTGGTGTTCA GGAAACGCGT TATCTAATGA ATGCGATGGA AAAAAACTAC TCTGAGCTGG TGAAAGAGCT TCAGCGCCAG TTACCCATTA ATAAAATCGC TGAAACTTTG CAACGGCTTG TATCAGAGCG GGTTTCTATT AGAGATTTAC GTCTTATTTT CGGCACCTTA ATTGACTGGG CGCCACGTGA AAAAGATGTC CTGATGTTGA CAGAATATGT CCGTATCGCG CTTCGTCGTC ATATTCTGCG TCGTCTTAAT CCGGAAGGAA AACCGCTGCC GATTTTGCGG ATCGGCGAAG GTATTGAAAA CCTCGTGCGT GAATCCATTC GCCAGACGGC AATGGGGACC TATACTGCGC TGTCGTCTCG TCATAAGACG CAGATCCTGC AACTTATCGA GCAGGCGCTG AAGCAGTCAG CCAAATTATT CATTGTCACT TCTGTCGACA CCCGACGTTT CTTGCGAAAA ATTACAGAAG CCACCTTGTT CGACGTACCG ATTTTGTCAT GGCAGGAATT AGGAGAGGAG AGCCTTATAC AAGTGGTAGA AAGTATTGAC CTTAGCGAAG AGGAGTTGGC GGACAATGAA GAATGA
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Protein sequence | MRSWLGEGVR AQQWLSVCAG RQDMVLATVL LIAIVMMLLP LPTWMVDILI TINLMFSVIL LLIAIYLSDP LDLSVFPSLL LITTLYRLSL TISTSRLVLL QHNAGNIVDA FGKFVVGGNL TVGLVVFTII TIVQFIVITK GIERVAEVSA RFSLDGMPGK QMSIDGDLRA GVIDADHART LRQHVQQESR FLGAMDGAMK FVKGDTIAGI IVVLVNIIGG IIIAIVQYDM SMSEAVHTYS VLSIGDGLCG QIPSLLISLS AGIIVTRVPG EKRQNLATEL SSQIARQPQS LILTAVVLML LALIPGFPFI TLAFFSALLA LPIILIRRKK SVVSANGVEA PEKDSMVPGA CPLILRLSPT LHSADLIRDI DAMRWFLFED TGVPLPEVNI EVLPEPTEKL TVLLYQEPVF SLSIPAQADY LLIGADASVV GDSQTLPNGM GQICWLTKDM AHKAQGFGLD VFAGSQRISA LLKCVLLRHM GEFIGVQETR YLMNAMEKNY SELVKELQRQ LPINKIAETL QRLVSERVSI RDLRLIFGTL IDWAPREKDV LMLTEYVRIA LRRHILRRLN PEGKPLPILR IGEGIENLVR ESIRQTAMGT YTALSSRHKT QILQLIEQAL KQSAKLFIVT SVDTRRFLRK ITEATLFDVP ILSWQELGEE SLIQVVESID LSEEELADNE E
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