Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SeHA_C1529 |
Symbol | |
ID | 6489490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
Kingdom | Bacteria |
Replicon accession | NC_011083 |
Strand | + |
Start bp | 1487403 |
End bp | 1488602 |
Gene Length | 1200 bp |
Protein Length | 399 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 642741752 |
Product | type III secretion apparatus protein, YscD/HrpQ family |
Protein accession | YP_002045399 |
Protein GI | 194449023 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 0.055163 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTAATC CAAAGAGTTC CTGGAAAATA CGTTTTTTAG GTCACGTTTT ACAAGGCCGG GAAGTATGGC TGAATGAAGG TAACCTGTCA CTGGGGGAGA AGGGATGCGA TATTTGTATT CCGCTGGCTA TAAATGAAAA AATTATTCTG AGAGAACAGG CAGATAGTTT ATTTGTTGAT GCCGGGAAAG CCAGAGTTAG AGTTAATGGT CGCAGATTTA ATCCAAATAA GCCGCTACCA TCCAGTGGGG TTTTGCAGGT TGCGGGAGTG GCTATCGCGT TTGGTAAACA GGATTGTGAA CTTGCTGATT ATCAAATACC CGTTTCCAGA TCAGGGTACT GGTGGTTGGC TGGCGTATTC TTGATTTTCA TCGGTGGAAT GGGTGTCCTG TTAAGTATTA GTGGTCAGCC TGAAACGGTA AATGACTTAC CTTTGCGGGT TAAGTTTTTA TTAGACAAAA GCAATATTCA TTATGTGCGG GCGCAATGGA AAGAAGATGG AAGCCTGCAG TTGTCCGGTT ATTGCTCGTC AAGCGAACAG ATGCAAAAGG TGAGAGCGAC TCTCGAATCA TGGGGGGTCA TGTATCGGGA TGGTGTAATC TGTGATGACT TATTGATACG AGAGGTGCAG GATGTTTTGA TAAAAATGGG TTACCCGCAT GCTGAAGTAT CCAGCGAAGG GCCGGGGAGC GTGTTAATTC ATGATGATAT ACAAATGGAT CAGCAATGGC GTAAGGTTCA ACCATTACTT GCAGATATTC CCGGGTTATT GCACTGGCAG ATTAGTCACT CTCATCAGTC TCAGGGGGAT GATATTATTT CTGCGATAAT AGAGAACGGT TTAGTGGGGC TTGTCAATGT TACGCCAATG CGGCGCTCTT TTGTTATCAG TGGTGTACTG GATGAATCTC ATCAACGCAT TTTGCAAGAA ACGTTAGCAG CATTAAAGAA AAAGGACCCC GCTCTTTCTT TAATTTATCA GGATATTGCG CCTTCTCATG ATGAAAGCAA GTATCTGCCC GCGCCAGTGG CTGGCTTTGT ACAGAGTCGC CATGGTAATT ACTTATTACT GACGAATAAA GAGCGTTTAC GTGTAGGGGC ATTGTTACCC AATGGAGGAG AAATTGTCCA TCTGAGTGCC GATGTGGTAA CGATTAAACA TCATGATACT TTGATTAACT ATCCATTAGA TTTTAAGTGA
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Protein sequence | MVNPKSSWKI RFLGHVLQGR EVWLNEGNLS LGEKGCDICI PLAINEKIIL REQADSLFVD AGKARVRVNG RRFNPNKPLP SSGVLQVAGV AIAFGKQDCE LADYQIPVSR SGYWWLAGVF LIFIGGMGVL LSISGQPETV NDLPLRVKFL LDKSNIHYVR AQWKEDGSLQ LSGYCSSSEQ MQKVRATLES WGVMYRDGVI CDDLLIREVQ DVLIKMGYPH AEVSSEGPGS VLIHDDIQMD QQWRKVQPLL ADIPGLLHWQ ISHSHQSQGD DIISAIIENG LVGLVNVTPM RRSFVISGVL DESHQRILQE TLAALKKKDP ALSLIYQDIA PSHDESKYLP APVAGFVQSR HGNYLLLTNK ERLRVGALLP NGGEIVHLSA DVVTIKHHDT LINYPLDFK
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