Gene SeHA_C1231 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeHA_C1231 
Symbol 
ID6488167 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Heidelberg str. SL476 
KingdomBacteria 
Replicon accessionNC_011083 
Strand+ 
Start bp1211236 
End bp1211874 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content55% 
IMG OID642741470 
ProductHTH-type transcriptional regulator RutR 
Protein accessionYP_002045121 
Protein GI194447890 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.696174 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value0.680174 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCAAC GCACAGAGAA AAAAATCGGG AAACGTTCGC AGGCCACCGG TGCAAAACGG 
CAGCTTATCT TAACCGCCGC GCTTGCCGTT TTTTCCCAGT ATGGCATTCA TGGCGCGCGT 
CTTGAGCAGG TCGCCGAGCG GGCAGGCGTC TCCAAAACCA ATCTGCTTTA TTATTATCCC 
TCGAAAGAGG CGCTGTATGT CGCGGTAATG CGACAGATCC TGGATGTCTG GCTGGCGCCG 
CTCAAGGCGT TTCGTGCAGA ATTTTCCCCT CTGGAGGCCA TCAAAGAGTA TATCCGTCTC 
AAGCTGGAGG TTTCGCGTGA TTATCCGCAG GCGTCGCGGC TCTTCTGCAT GGAGATGCTG 
GCGGGCGCGC CGCTCTTAAT AGAGGAACTG ACCGGCGATC TAAAAGCGTT GATAGATGAA 
AAATCCGCGC TGATTGCCGG ATGGGTGCAC AGCGGGAAAC TGGCGCCCGT CTCCCCGCAC 
CATTTGATCT TCATGATTTG GGCCGCCACG CAACATTACG CCGATTTTGC CCCTCAGGTT 
GAGGCGGTAA CCGGCGCGAC GCTTCGCGAT GAAGCCTTTT TCAACCAAAC GGTCGAAAGC 
GTTCAGCGCA TTATTATTGA AGGGATTCGC GTGCGTTAA
 
Protein sequence
MSQRTEKKIG KRSQATGAKR QLILTAALAV FSQYGIHGAR LEQVAERAGV SKTNLLYYYP 
SKEALYVAVM RQILDVWLAP LKAFRAEFSP LEAIKEYIRL KLEVSRDYPQ ASRLFCMEML 
AGAPLLIEEL TGDLKALIDE KSALIAGWVH SGKLAPVSPH HLIFMIWAAT QHYADFAPQV 
EAVTGATLRD EAFFNQTVES VQRIIIEGIR VR