| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C0524 |
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| Symbol | dxs |
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| ID | 6488672 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011083 |
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| Strand | - |
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| Start bp | 521765 |
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| End bp | 523627 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642740790 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_002044457 |
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| Protein GI | 194451900 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.296221 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 77 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTG ATATAGCCAA ATACCCTACC CTGGCATTGG TCGACTCCAC CCAGGAGTTA
CGACTGTTAC CGAAAGAGAG TCTGCCGAAA CTCTGCGACG AGCTACGCCG CTACTTACTC
GACAGCGTAA GCCGTTCCAG CGGGCATTTC GCTTCCGGGC TGGGCACGGT AGAACTTACC
GTGGCGCTGC ATTATGTCTA CAACACCCCG TTTGACCAGC TAATCTGGGA TGTTGGACAC
CAGGCTTATC CACATAAAAT CCTTACCGGT CGTCGCGACA AAATCGGCAC CATTCGCCAG
AAAGGCGGTC TGCACCCGTT CCCGTGGCGC GGAGAAAGCG AATACGATGT GCTGAGCGTT
GGGCATTCCT CCACCTCTAT CAGCGCCGGT ATCGGTATTG CCGTGGCGGC GGAGAAAGAA
GGCAAAGATC GCCGCACCGT CTGTGTGATT GGCGACGGCG CCATCACCGC CGGTATGGCG
TTTGAAGCAA TGAATCACGC AGGCGATATC CGGCCCGACA TGCTGGTCAT TCTGAACGAC
AATGAAATGT CGATTTCGGA AAACGTCGGC GCGCTCAACA ACCATCTGGC GCAGCTACTT
TCCGGTAAGC TTTACTCTTC TCTGCGCGAA GGCGGAAAAA AGGTCTTCTC CGGCGTACCG
CCAATTAAAG AACTGCTCAA GCGTACCGAA GAACATATTA AAGGCATGGT TGTGCCGGGC
ACACTGTTCG AAGAGCTGGG CTTTAACTAC ATCGGGCCGG TCGATGGTCA CGATGTCATG
GGGCTTATCA GCACATTGAA GAACATGCGC GACCTGAAAG GCCCGCAGTT CCTGCATATC
ATGACCAAGA AAGGCCGCGG CTATGAGCCC GCGGAAAAAG ATCCGATCAC TTTCCATGCG
GTGCCTAAAT TTGATCCCTC CAGCGGATGT TTGCCGAAAA GCAGCGGCGG TCTGCCAGGT
TATTCAAAAA TCTTCGGTGA CTGGCTGTGT GAAACTGCCG CCAAAGACAG CAAGCTGATG
GCGATCACCC CGGCAATGCG CGAAGGTTCC GGCATGGTGG AATTTTCACG TAAATTCCCG
GATCGCTATT TTGACGTCGC CATCGCCGAG CAGCATGCCG TCACCTTCGC CGCAGGTCTG
GCGATTGGCG GCTATAAGCC CGTCGTGGCG ATCTACTCTA CTTTCCTGCA ACGCGCCTAC
GATCAGGTCA TCCATGACGT CGCTATCCAG AAACTGCCGG TCATGTTCGC CATCGATCGC
GCCGGTATCG TTGGCGCGGA TGGGCAAACA CACCAGGGCG CATTCGATCT CTCCTATCTG
CGCTGCATCC CGGATATGGT GATCATGACG CCAAGCGACG AAAACGAATG TCGCCAGATG
TTACTTACCG GGTATCACTA TAACGACGGC CCGACGGCAG TACGTTATCC ACGCGGTAAT
GCGCAGGGCG TGGCGCTAAC CCCGCTGGAA AAACTGCCTA TTGGTAAAGG CCTTGTGAAG
CGTCATGGCG AAAAACTGGC GATTCTGAAC TTTGGCACCT TAATGCCTGA GGCGGCGAAA
GTCGCCGAAG CGCTTAACGC CACGCTGGTC GACATGCGCT TTGTTAAGCC GCTGGACGAC
ACGCTAATTC TGGAGATGGC CGCGCAGCAT GACGCGCTAG TGACGCTGGA AGAAAACGCC
ATTATGGGCG GCGCTGGCAG CGGCGTAAAC GAAGTGCTAA TGGCCCATCG TAAACCTGTA
CCTGTGCTGA ATATCGGTCT TCCGGATTTC TTTATCCCGC AAGGAACGCA GGAAGAAGCC
CGCGCGGAAC TGGGGCTTGA CGCCGCAGGC ATTGAAGCCA AAATCAAGGC CTGGCTGGCA
TAA
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| Protein sequence | MSFDIAKYPT LALVDSTQEL RLLPKESLPK LCDELRRYLL DSVSRSSGHF ASGLGTVELT
VALHYVYNTP FDQLIWDVGH QAYPHKILTG RRDKIGTIRQ KGGLHPFPWR GESEYDVLSV
GHSSTSISAG IGIAVAAEKE GKDRRTVCVI GDGAITAGMA FEAMNHAGDI RPDMLVILND
NEMSISENVG ALNNHLAQLL SGKLYSSLRE GGKKVFSGVP PIKELLKRTE EHIKGMVVPG
TLFEELGFNY IGPVDGHDVM GLISTLKNMR DLKGPQFLHI MTKKGRGYEP AEKDPITFHA
VPKFDPSSGC LPKSSGGLPG YSKIFGDWLC ETAAKDSKLM AITPAMREGS GMVEFSRKFP
DRYFDVAIAE QHAVTFAAGL AIGGYKPVVA IYSTFLQRAY DQVIHDVAIQ KLPVMFAIDR
AGIVGADGQT HQGAFDLSYL RCIPDMVIMT PSDENECRQM LLTGYHYNDG PTAVRYPRGN
AQGVALTPLE KLPIGKGLVK RHGEKLAILN FGTLMPEAAK VAEALNATLV DMRFVKPLDD
TLILEMAAQH DALVTLEENA IMGGAGSGVN EVLMAHRKPV PVLNIGLPDF FIPQGTQEEA
RAELGLDAAG IEAKIKAWLA
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