| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeHA_C0232 |
|---|
| Symbol | |
|---|
| ID | 6488381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011083 |
|---|
| Strand | + |
|---|
| Start bp | 239043 |
|---|
| End bp | 241700 |
|---|
| Gene Length | 2658 bp |
|---|
| Protein Length | 885 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642740511 |
|---|
| Product | fimbrial usher protein |
|---|
| Protein accession | YP_002044185 |
|---|
| Protein GI | 194448970 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 76 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCACT ATAAAAAATT TCGTCTGAGC ACGCTTGCGG CCGTGGTGGG TATTGTTCTG
GCTGTCGGTC CGGAAAATAG CTATGCGGAA GCGCCCATTC AATTTAATAC CCGATTTCTT
GATGTTAAAG ATGATGCCAG CCTGGATCTC TCCCGTTTTT CCCGTAAAGG CTACATTATG
CCGGGGAGCT ATCATCTCCA GGTGCTGGTC AATCAGAGTC AAATTGCCCA GGATAATGTT
ATTACGTATT CCGTTGATAA TAACGATCCT GATAACACCT ATCCCTGTTT ATCGCCTGAA
CTGGTATCGC TGCTGGGGTT AAAACCTGAA ATAGCAGATA AAATGATCTG GATAAATGCC
GGTCAGTGTC TGCAACCAGA TCAACTGGAA GGGATGGAAA CCCAAACGGA TTTAAGCCAG
TCAACGCTGA CGGTGATTAT TCCGCAGGCC TATCTGGAAT ACAGCGATGA AGAGTGGGAT
CCACCTTCCC GCTGGGATGA AGGGATTCCC GGCGTATTAT TTGACTACAA CGTTAACAGC
CAGTGGCGAC ATGCTGAACA TGATGACGGC GATGAGTATG ACATCAGCGG CAACGGCACG
GTGGGTGCCA ACCTCGGCGC GTGGCGTTTG CGCGCGGACT GGCAGGCTAA CTATCGTCAC
GAAAATGACA GCGAAGATAA AGACAACTTT GGCTCCAGTT CCGAACAGAA CTGGGACTGG
AACCGCTATT ACGCCTGGCG GGCGATCCCG CAGCTCCGGG CGCAGCTAAC GCTGGGCGAA
GGATCGCTGG AATCCGATAT TTTCGACGGC TTTAACTATG TTGGCGGCAG CCTTATCACC
GACGATCAGA TGTTACCGCC TAATCTGCGC GGCTACGCCC CGGATATATC AGGCGTGGCG
CGCACCAACG CCAAAGTCAC CGTGACCCAG CGCGGGCGGG TGATTTATGA GTCGCAGGTC
CCGGCTGGGC CGTTTCGCAT TCAGGATATT AATGAAACGG TATCCGGCGA TCTACACGTC
AAAATTGAAG AACAAAGCGG TCAGGTGCAG GAATATGACG TCAGCACCGC CTCCATTCCG
TTTCTGACCC GTCCCGGCCA GGTGCGCTAC AAGTTGGCAG CCGGGCGACC GCAGGACTGG
GATCACAATA TGGAAGGCGG CTTTTTCACC TCAGCCGAAG CCTCCTGGGG GATCGCTAAC
GGCTGGTCGC TGTACGGCGG TGCCATCGGT GAGCAGGATT ATCAGGCGCT GGCGTTAGGA
CTGGGGCGCG ATCTGGCGCT GCTGGGCGCG TTTTCCGTCG ATGTCACCCA TTCCCGTGCG
ACGCTGCCAG AGGGTAGCGC CTACGGCGAC GGCACCATTC AGGGTAACTC GTTCCGTGCC
AGCTACGCTA AAGATTTTGA TGATATAGAC AGCCGTCTGA CGTTTGCTGG TTATCGCTTT
TCCGAAGAAA ACTACATGAC GATGGACGAG TTTATCGATA CGCATAATGA CGATAACGAT
CGTCAGCGCA CCGGCCACGA TAAAGAGATG TATACCCTGA CGTACAGCCA GAACTTTTCG
GCAATAAACG TCAACGCCTA TATCAACTAC ACCCATCGCA CCTACTGGAA TCAACCTAAC
CAGGACAGCT ATAACCTGAC GCTGTCGCAC TATTTCGATG TCGGTGAGGT GCGCGGGATC
AGTCTGTCGG TGAACGGTTT TCGCAACGAA TATGACAATG AGCGTGATGA CGGCGTGTAC
GTCTCGCTCA GTATTCCGTG GGGCAACAAC CGCACGCTGA GCTACAACGG CTCCTTTAGC
GATGACAACA ACAGCAATCA GGTCGGCTAT TACGAGCGCA TTGACGATCG CAATAACTAC
CAGATCAACG CTGGTCGCAC GGATAACGGT GCGACTCTCG ACGGCTACTA CCGTCATCAA
GCGAGCTATG CCGACATTGA CGTCAGTGCG AACTATCAGG AAGGCGACTA TACCTCCGGC
GGGCTGAACA TCCAGGGCGG CGCGACGCTG ACTGCTAAAG GCGGGGCGCT GCACCGCACC
AGCGTCAACG GCGGCTCGCG GCTGCTGGTG GATGTCGGCG ATGAAGCGAA CGTACCCATC
TCCGGCTACA GCACGCCGGT ATATACCAAC GCGTTTGGTA AAGCCGTCAT TGTCGACGTC
AACGACTACT ACCGCAACCA GGTGAAAATC GACATTACCC AGTTGCCGGA AGACGCGGAA
GCAATCCTCT CCATCGCTCA GGCGACCCTG ACGGAAGGGG CGATCGGTTA TCGCCGCATG
GAGGTGCTCA GCGGTAAAAA AGCCATGGGC AGTATCCGCC TGCGCGATGG CGGCACACCC
CCCTTCGGTG CGGAAGTTTA CAACAGCCGC CAGCAACAGT TAGGGATCGT CGGCGAAGGC
GGCAGCGTTT ATCTGATCGG CATTAACCCC GGCGAGCGGT TGCAGGTGAC ATGGGAAGGT
AAAACGCAGT GTGAAGCGGC GTTGCCCGAT CCGCTGCCGG GCGATCTGTT TAGCGGCCTG
TTGCTGCCGT GCATCGGCGA CGCTTCATCA CCTGAGGCAA CGCAGCCCGA AGAGAAACCA
TTACTCCAGC TTCATACGCA GCGGCGGACG TCTTCGACGC AACCCGAAGC GCTCTCTTCT
CGTTATCCAA CACATTGA
|
|---|
| Protein sequence | MAHYKKFRLS TLAAVVGIVL AVGPENSYAE APIQFNTRFL DVKDDASLDL SRFSRKGYIM
PGSYHLQVLV NQSQIAQDNV ITYSVDNNDP DNTYPCLSPE LVSLLGLKPE IADKMIWINA
GQCLQPDQLE GMETQTDLSQ STLTVIIPQA YLEYSDEEWD PPSRWDEGIP GVLFDYNVNS
QWRHAEHDDG DEYDISGNGT VGANLGAWRL RADWQANYRH ENDSEDKDNF GSSSEQNWDW
NRYYAWRAIP QLRAQLTLGE GSLESDIFDG FNYVGGSLIT DDQMLPPNLR GYAPDISGVA
RTNAKVTVTQ RGRVIYESQV PAGPFRIQDI NETVSGDLHV KIEEQSGQVQ EYDVSTASIP
FLTRPGQVRY KLAAGRPQDW DHNMEGGFFT SAEASWGIAN GWSLYGGAIG EQDYQALALG
LGRDLALLGA FSVDVTHSRA TLPEGSAYGD GTIQGNSFRA SYAKDFDDID SRLTFAGYRF
SEENYMTMDE FIDTHNDDND RQRTGHDKEM YTLTYSQNFS AINVNAYINY THRTYWNQPN
QDSYNLTLSH YFDVGEVRGI SLSVNGFRNE YDNERDDGVY VSLSIPWGNN RTLSYNGSFS
DDNNSNQVGY YERIDDRNNY QINAGRTDNG ATLDGYYRHQ ASYADIDVSA NYQEGDYTSG
GLNIQGGATL TAKGGALHRT SVNGGSRLLV DVGDEANVPI SGYSTPVYTN AFGKAVIVDV
NDYYRNQVKI DITQLPEDAE AILSIAQATL TEGAIGYRRM EVLSGKKAMG SIRLRDGGTP
PFGAEVYNSR QQQLGIVGEG GSVYLIGINP GERLQVTWEG KTQCEAALPD PLPGDLFSGL
LLPCIGDASS PEATQPEEKP LLQLHTQRRT SSTQPEALSS RYPTH
|
|---|
| |