Gene SeD_B0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_B0020 
Symbol 
ID6870923 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011204 
Strand+ 
Start bp12659 
End bp13426 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content55% 
IMG OID642783172 
Product28.1 kDa virulence protein 
Protein accessionYP_002213866 
Protein GI198241717 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.949427 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones105 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATATGA ATCAGACCAC CAGTCCGGCA CTTTCACAGG TCGAAACCGC CATCCGGGCC 
CCGGCAGGGA ATTTTGCAAA ATATAATTAT TATTCCGTGT TTGATATTGT CCGTCAGACC 
CGTAAACAGT TTATTAACGC CAATATGTCA TGGCCGGGCT CCCGCGGAGG TAAAGCCTGG 
GACCTGGCGA TGGGCCAGGC GCAGTATATC CGCTGCATGT TCCGAGAAAA TCAATTGACC 
CGCAGAGTTC GGGGGACCTT GCAGCAGACA CCGGACAATG GCACGAACCT GAGCAGTTCC 
GCTGTCGGCG GTATTCAGGG ACAGGCAGAG CGTCGGCCGG ACCTGGCCAC CCTGATGGTG 
GTTAATGATG CCATTAACCA GCAAATACCG ACCCTGCTGC CGTATCATTT TCCACACGAC 
CAGGTGGAGT TATCTCTGCT GAATACCGAT GTGTCGCTGG AAGATATTAT CAGCGAGAGC 
AGCATTGACT GGCCGTGGTT CCTGAGCAAC TCGCTGACCG GCGATAACAG TAACTATGCC 
ATGGAGCTCG CCAGCCGGCT GTCACCAGAG CAGCAGACAC TGCCGACCGA GCCGGACAAC 
AGTACCGCCA CTGACCTGAC CTCTTTTTAC CAGACCAATC TGGGGCTGAA AACCGCCGAC 
TATACGCCAT TTGAAGCACT GAATACCTTT GCCCGACAGT TAGCGATTAC CGTTCCCCCA 
GGTGGAACAG TTGATTGCGG GTACTCTGCG TGCCAGCCGG CAGTTTAG
 
Protein sequence
MNMNQTTSPA LSQVETAIRA PAGNFAKYNY YSVFDIVRQT RKQFINANMS WPGSRGGKAW 
DLAMGQAQYI RCMFRENQLT RRVRGTLQQT PDNGTNLSSS AVGGIQGQAE RRPDLATLMV 
VNDAINQQIP TLLPYHFPHD QVELSLLNTD VSLEDIISES SIDWPWFLSN SLTGDNSNYA 
MELASRLSPE QQTLPTEPDN STATDLTSFY QTNLGLKTAD YTPFEALNTF ARQLAITVPP 
GGTVDCGYSA CQPAV