Gene SeD_A4774 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A4774 
Symbol 
ID6871176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand+ 
Start bp4632130 
End bp4633752 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content57% 
IMG OID642787666 
Productisovaleryl CoA dehydrogenase 
Protein accessionYP_002218260 
Protein GI198244552 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones67 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTGGC AAACACATAC CGTCTTTAAT CAACCTGCTC CGCTCAATAA CAGTAACTTA 
TTCCTGTCTG ATGGCGCGCT GTGTGAAGCG GTTTCCCGGG AAGGCGCGGG ATGGGATAGC 
GATCTTCTCG CCAGCATTGG CCAACAACTG GGAACGGCGG AATCACTGGA GCTGGGTCGT 
CTGGCGAACG CGCATCCTCC TGAGTTGCTG CGTTACGATC CCCAGGGACA GCGTCTGGAT 
GACGTTCGCT TTCATCCCGC CTGGCACCTG TTGATGCAGG GGCTTTGCGC TAATCGGGTA 
CATAACCTGG CCTGGGAGGA GGAGGCAAGG GCGGGAAGTT TTGTCGCCCG GGCGGCGCGT 
TTTGTATTAC ATGCTCAGGT AGAAGCGGGA ACACTCTGTC CTGTCACGAT GACCTTTGCC 
GCGACACCGT TGCTATTGCA GATGCTTCCC GCCACTTTCC ATGACTGGCT GGTGCCGCTG 
CGCAGCGATC GCTACGATTC GCATTTGCTG CCGGGCGGGC AAAAGCGGGG TCTGCTCATC 
GGCATGGGAA TGACGGAAAA GCAGGGCGGA TCTGACGTAC TCAGTAATAC GACCCACGCG 
GAGCGGCTGG CGGATGATTC ATATCGGCTG GTGGGACATA AATGGTTTTT CTCTGTGCCG 
CAAAGTGATG CGCACCTCGT GTTGGCGCAG GCAAAAGGAG GACTATCCTG TTTCTTTGTG 
CCGCGTTTCC TGCCAGACGG GCAACGGAAC TCTGTTCGTC TTGAACGCCT GAAAGATAAA 
CTCGGTAATC GATCTAATGC CAGCGCCGAA GTCGAGTTTC AGGATGCCGT CGGCTGGCGG 
CTGGGAGAAG AGGGCGAAGG GATTCGGCAT ATCTTAAAGA TGGGCGGTAT GACGCGTCTT 
GATTGCGCGC TCGGGAGTCA TGGCTTAATG CGGCGCGCAT TTTCAGTCGC GATTTACCAT 
GCTCATCAGC GTCAGGCTTT TGGTAAGCCG CTGATCGAAC AACCGTTGAT GCGACAAACC 
TTAAGTCGTA TGGCGCTATG CCTGGAGGGG CAGACGGCGC TTTTGTTTCG GCTGGCGCGC 
GCCTGGGAGC AACGTCGCGA GGCGAAAGAG GCATTATGGG CGCGATTATT CACGCCAGCG 
GCGAAATTCG CCATCTGTAA GCAGGGAATC CCTTTTGTGG CTGAGGCGAT GGAGGTTCTC 
GGCGGGATGG GGTATTGCGA AGAGAGCGAA CTCCCGCGCC TGTACCGTGA AATGCCGGTG 
AACAGTATCT GGGAAGGGTC CGGCAATATC ATGTGTCTGG ATGTACTTCG GGTGCTGACA 
AAACAACACG GCGTCTATGA CGTATTGAGT GAGGCTTTTG CGGAAGTCAA AGGCCAGGAT 
CGCCATTACG ACCGCGCGGT ACGTCAGCTA CAGCAACGTT TACGCAAACC GGACGAAGCA 
ATGGGCAGAG AGATTACGCA GCAGCTTTTC TTGCTGGGAT GCGGAGCGGA AATGCTGCGT 
CATGCCTCGC CGCCGCTGGC GCAAGCGTGG TGTCAGATGA TGCTGGATAC ACGCGGCGAA 
ATGCCGCTGT CTGCCCAGGT ACAAAATGAT TTACTGTTAA GGGCGACCGG GGGACTGCGG 
TAA
 
Protein sequence
MSWQTHTVFN QPAPLNNSNL FLSDGALCEA VSREGAGWDS DLLASIGQQL GTAESLELGR 
LANAHPPELL RYDPQGQRLD DVRFHPAWHL LMQGLCANRV HNLAWEEEAR AGSFVARAAR 
FVLHAQVEAG TLCPVTMTFA ATPLLLQMLP ATFHDWLVPL RSDRYDSHLL PGGQKRGLLI 
GMGMTEKQGG SDVLSNTTHA ERLADDSYRL VGHKWFFSVP QSDAHLVLAQ AKGGLSCFFV 
PRFLPDGQRN SVRLERLKDK LGNRSNASAE VEFQDAVGWR LGEEGEGIRH ILKMGGMTRL 
DCALGSHGLM RRAFSVAIYH AHQRQAFGKP LIEQPLMRQT LSRMALCLEG QTALLFRLAR 
AWEQRREAKE ALWARLFTPA AKFAICKQGI PFVAEAMEVL GGMGYCEESE LPRLYREMPV 
NSIWEGSGNI MCLDVLRVLT KQHGVYDVLS EAFAEVKGQD RHYDRAVRQL QQRLRKPDEA 
MGREITQQLF LLGCGAEMLR HASPPLAQAW CQMMLDTRGE MPLSAQVQND LLLRATGGLR