| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A4765 |
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| Symbol | rnr |
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| ID | 6872369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | + |
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| Start bp | 4623579 |
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| End bp | 4626017 |
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| Gene Length | 2439 bp |
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| Protein Length | 812 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 642787658 |
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| Product | exoribonuclease R |
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| Protein accession | YP_002218252 |
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| Protein GI | 198243705 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.57696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 71 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACAAG ATCCTTTCCA GGAACGCGAA GCAGAAAAAT ACGCGAATCC TATCCCGAGC
CGGGAATTTA TCCTCGAACA TTTAACGAAA CGTGAAAAAC CGGCCAGTCG CGAAGAACTG
GCCGTAGAAC TGAATATTGA AGGCGAAGAG CAGCTTGAAG CCTTGCGTCG CCGCCTGCGC
GCGATGGAGC GCGATGGACA ACTGGTCTTT ACTCGCCGCC AGTGCTATGC GCTGCCGGAA
CGCCTCGACC TGCTGAAAGG CACCGTGATC GGTCATCGTG ATGGTTACGG TTTCTTACGT
GTCGAAGGCC GCAAAGACGA TCTGTATCTT TCCAGCGAGC AGATGAAAAC CTGTATTCAT
GGCGATCAGG TGCTGGCGCA GCCGCTGGGC GCCGATCGTA AAGGTCGCCG CGAAGCGCGT
ATCGTCCGTG TACTGGTACC GAAAACCAGT CAGATAGTCG GGCGTTATTT CACCGATGCG
GGCGTCGGCT TTGTGGTGCC GGACGACAGC CGTCTCAGCT TCGACATTCT TATCCCGCCA
GAAGACGTCA TGGGCGCGCG GATGGGGTTC GTGGTCGTGG TTGAACTGAC CCAACGTCCA
ACTCGCCGTA CTAAAGCGGT AGGGAAAATC GTCGAAGTGC TGGGCGACAA TATGGGCACC
GGTATGGCGG TTGATATGGC GCTGCGTACC CATGAAATAC CCTACATCTG GCCGCAGGCG
GTAGAGCAGC AGGTCACCGG GCTGAAAGAA GAGGTGCCGG AAGAGGCGAA AGTCGGTCGT
GTCGATCTGC GCGATTTGCC GCTGGTCACT ATTGATGGCG AAGATGCCCG TGACTTTGAC
GACGCGGTTT ACTGTGAGAA AAAACGCGGC GGCGGCTGGC GTTTGTGGGT CGCTATTGCT
GACGTGAGCT ATTATGTACG GCCGCCAACG CCGTTGGATC GCGAGGCGCG CAATCGCGGC
ACGTCGGTTT ACTTCCCGTC ACAGGTTGTC CCAATGTTGC CGGAGGTGCT CTCCAACGGT
CTGTGTTCGC TAAACCCGCA GGTTGACAGG CTGTGTATGG TCTGTGAAAT GACCATCTCG
GCGAAAGGTC GGCTGACCGG CTACAAATTC TATGAAGCGG TGATGAGCTC CCATGCGCGT
CTGACCTATA CCAAAGTCTG GCATATGCTG CAGGGCGATC AGGATCTGCG TGAACAATAT
GCGCCGCTGG TGAAGCATAT TGAAGAGCTG CACAACCTCT ACAAAGTGCT GGATAAAGCG
CGTGAAGAGC GCGGGGGGAT CTCGTTTGAG AGCGAAGAGG CGAAGTTTAT CTTTAACGCC
GATCGTCGCA TTGAGCGTAT CGAACAGACC CAGCGTAATG ACGCGCATAA GCTTATCGAA
GAGTGCATGA TCATGGCGAA TATCTCGGCG GCGCGCTTTG TCGAAAAAGC TAAAGAGCCG
GCGCTATTCC GTATTCATGA TAAGCCCACC ACCGAAGCGA TCACCTCATT CCGCTCCGTA
CTGGCGGAGC TGGGGTTGGA GCTGCCGGGC GGAAATAAAC CGGAACCGCG CGATTATGCC
GAACTGCTTG AATCGATTGC CGACCGGCCG GACGCCGAAA TGCTGCAAAC TATGCTGCTG
CGTTCAATGA AGCAGGCGAT TTACGATCCG GAAAACCGCG GGCACTTTGG CCTGGCGTTG
CAGTCTTATG CGCACTTTAC CTCGCCGATT CGCCGCTATC CGGATCTTTC TTTGCACCGC
GCCATTAAGT ACCTGCTGGC TAAAGAGCAA GGGAACAAGG GCAACACCAC AGAAACGGGC
GGTTATCACT ACTCGATGGA AGAGATGTTG CAGCTCGGCC AGCACTGTTC GATGGCGGAA
CGCCGCGCTG ATGAAGCGAC GCGTGATGTC TCCGACTGGC TGAAATGTGA CTTTATGCTG
GATCAGGTAG GCAACGTCTT TAAGGGCGTG ATTGCCAGCG TCACCGGTTT CGGCTTCTTT
GTCCGTCTTG ATGAACTGTT TATCGATGGG CTGGTACACG TTTCCTCACT GGATAACGAT
TACTATCGCT TCGATCAGGT AGGGCAACGC CTGATTGGCG AGTCCGGCGG GCAGACATAT
CGCCTGGGCG ACCGGGTCGA GGTACGCGTC GAAGCGGTGA ATATGGACGA ACGGAAAATT
GACTTTAGCC TGATCTCCAG CGAGCGCGCA CCGCGTAACG TCGGCAAAAC GGCGCGTGAA
AAAGCGAAAA AAGGTGAAAG TAAAAACGCC GGTAAACGTC GTCAGGTAGG TAAAAAAGTT
AACTTCGAGC CTGATAGCGC CTTCCGCGGC GAGAAAAAAG CGAAGCCGAA AGCAGCGAAG
AAAGACGCGA GAAAAGCAAA AAAGCCATCG GCTAAAACGC AGAAAATAGC CGCAGCGACC
AAAGCGAAGC GTGCGGCGAA GAAAAAAGCG GCAGAGTGA
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| Protein sequence | MSQDPFQERE AEKYANPIPS REFILEHLTK REKPASREEL AVELNIEGEE QLEALRRRLR
AMERDGQLVF TRRQCYALPE RLDLLKGTVI GHRDGYGFLR VEGRKDDLYL SSEQMKTCIH
GDQVLAQPLG ADRKGRREAR IVRVLVPKTS QIVGRYFTDA GVGFVVPDDS RLSFDILIPP
EDVMGARMGF VVVVELTQRP TRRTKAVGKI VEVLGDNMGT GMAVDMALRT HEIPYIWPQA
VEQQVTGLKE EVPEEAKVGR VDLRDLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
DVSYYVRPPT PLDREARNRG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR LCMVCEMTIS
AKGRLTGYKF YEAVMSSHAR LTYTKVWHML QGDQDLREQY APLVKHIEEL HNLYKVLDKA
REERGGISFE SEEAKFIFNA DRRIERIEQT QRNDAHKLIE ECMIMANISA ARFVEKAKEP
ALFRIHDKPT TEAITSFRSV LAELGLELPG GNKPEPRDYA ELLESIADRP DAEMLQTMLL
RSMKQAIYDP ENRGHFGLAL QSYAHFTSPI RRYPDLSLHR AIKYLLAKEQ GNKGNTTETG
GYHYSMEEML QLGQHCSMAE RRADEATRDV SDWLKCDFML DQVGNVFKGV IASVTGFGFF
VRLDELFIDG LVHVSSLDND YYRFDQVGQR LIGESGGQTY RLGDRVEVRV EAVNMDERKI
DFSLISSERA PRNVGKTARE KAKKGESKNA GKRRQVGKKV NFEPDSAFRG EKKAKPKAAK
KDARKAKKPS AKTQKIAAAT KAKRAAKKKA AE
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