| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3907 |
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| Symbol | glgX |
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| ID | 6874949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011205 |
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| Strand | - |
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| Start bp | 3743875 |
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| End bp | 3745851 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642786867 |
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| Product | glycogen debranching enzyme |
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| Protein accession | YP_002217495 |
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| Protein GI | 198242893 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.385353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 0.48763 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCAGC TTGCGATCGG CGAAGCAACG CCGCATGGCG CAACGTATGA CGGTCATGGC
GTGAATTTCA CGCTCTTTTC CGCTCATGCG GAGCGCGTAG AGCTGTGCGT TTTTGATTCC
CGAGGGAATG AGCGTCGCTA TGACCTGCCA GGACGTCGCG GCGATGTCTG GCATGGTTAT
CTGGCAGGCG CCAGGCCAGG TTTGCGCTAT GGCTATCGCG TACATGGCCC GTGGCAGCCA
GCGCAGGGGC ATCGGTTTAA TCCGGCGAAG TTACTGCTTG ACCCTTATGC GCGCCGGGTC
GAGGGCGAAC TAAAAGATCA TCCGCTGTTG CACGGCGGAC ACGATGAACC GGACTACCGC
GATAACGCGG CGGTGGCGCC GAAAAGTGTG GTAATCAGCG ACCATTATGA CTGGGAAGAT
GACGCCGCGC CGCGCACGCC GTGGGGAAAA ACGGTCATCT ATGAAGCGCA TGTCAAAGGG
CTTACCTATC TGCATCCGGA ACTCCCCCAG GAGATACGCG GCACCTATAA AGCGCTCGGT
CATCCGGTCA TGGTGGCGTA CTTCAAACAG CTTGGCATTA CGGCGCTGGA ACTGTTGCCG
GTGGCGCAGT TTGCCAGCGA GCCGCGCCTG CAACGTATGG GGCTGACCAA TTATTGGGGT
TATAACCCGA TGGCGATGTT CGCGCTGCAT CCCGCCTGGG CCAGTTCGCC CGAGATGGCG
CTGGATGAGT TTCGCGATGC GGTGAAAGCG CTGCATCGCG CGGGGATTGA GGTCATTCTG
GACATCGTAT TAAACCATAG CGCCGAGCTG GATCTGGACG GTCCAACCTT CTCCCTGCGC
GGAATTGATA ACCGTAGCTA TTATTGGATA AGGGACGATG GCGATTATCA CAACTGGACG
GGGTGCGGCA ACACGCTCAA TTTAAGCCAT CCCGGCGTGG TGGAATACGC GTGCGAGTGT
TTGCGCTATT GGGTGGAAAC CTGTCATGTC GATGGTTTTC GTTTTGATTT GGCGTCCGTC
ATGGGGCGCA CGCCGACGTT TCGCCAGGAT GCGCCGCTGT TTGCCGCGAT TAAAGCGTGT
CCTGTGTTAT CAACGGTCAA GCTGATTGCT GAACCGTGGG ATATTGGCGA GGGCGGCTAT
CAGGTCGGGA ATTTTCCGCC ACCGTTTGCC GAGTGGAACG ATCATTTTCG CGATGCGGCC
CGCCGATTCT GGTTGCCGCG TAACCTGACG ACCGGGGAGT TTGCCTGTCG TTTCGCCGCT
TCCAGCGATG TGTTTAAACG CAATGGCCGC GCGCCCGGCG CCTCTGTCAA TCTGCTCACG
GCGCATGACG GTTTTACGCT CCGGGACTGC GTCTGTTTCA ATCAGAAACA CAATGAGGCG
AACGGTGAGG AAAATCGCGA CGGCACCAAC AGCAATTACA GCGACAATCA TGGTAAAGAA
GGATTAGGCG GTCCGCTTGA TTTAATGGAG CGGCGGCGCG ACAGCATTCA TGCCCTGCTG
GCGACGCTAC TGCTCTCTCA GGGAACGCCG ATGCTGCTGG CAGGCGATGA ACACGGCCAT
AGCCAGCACG GCAACAATAA CGCCTACTGT CAGGATAATG CCTTAACCTG GCTGGACTGG
CAGCAGGCAA ATCGTGGGTT AACCACGTTT ACCGCCGCGC TGATTCGTTT GCGTCAGCAG
ATACCGGCTT TAACCGGCAA TAGCTGGTGG GAAGAGGGCG ATGGCAACGT GCGTTGGCTG
AATAAAAACG CGCAACCCTT GAGTGCGGAT GAGTGGCAAA ACGGGCCTAA GCTGATGCAA
ATTCTGTTGT CGGACCGTTT TCTGATAGCG ATAAATGCCA CGCTTGAGGT GACAGATATA
GTTTTACCCG AAGGGGAATG GCGCGCCGTT CCCCCATTCG CTGGAGAGGA TAATCCGGTG
ATAACGGCGG TCTGGCAGGG ACCTGCGCAT GGACTGTGTG TGTTCCAGAG AGGATAA
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| Protein sequence | MTQLAIGEAT PHGATYDGHG VNFTLFSAHA ERVELCVFDS RGNERRYDLP GRRGDVWHGY
LAGARPGLRY GYRVHGPWQP AQGHRFNPAK LLLDPYARRV EGELKDHPLL HGGHDEPDYR
DNAAVAPKSV VISDHYDWED DAAPRTPWGK TVIYEAHVKG LTYLHPELPQ EIRGTYKALG
HPVMVAYFKQ LGITALELLP VAQFASEPRL QRMGLTNYWG YNPMAMFALH PAWASSPEMA
LDEFRDAVKA LHRAGIEVIL DIVLNHSAEL DLDGPTFSLR GIDNRSYYWI RDDGDYHNWT
GCGNTLNLSH PGVVEYACEC LRYWVETCHV DGFRFDLASV MGRTPTFRQD APLFAAIKAC
PVLSTVKLIA EPWDIGEGGY QVGNFPPPFA EWNDHFRDAA RRFWLPRNLT TGEFACRFAA
SSDVFKRNGR APGASVNLLT AHDGFTLRDC VCFNQKHNEA NGEENRDGTN SNYSDNHGKE
GLGGPLDLME RRRDSIHALL ATLLLSQGTP MLLAGDEHGH SQHGNNNAYC QDNALTWLDW
QQANRGLTTF TAALIRLRQQ IPALTGNSWW EEGDGNVRWL NKNAQPLSAD EWQNGPKLMQ
ILLSDRFLIA INATLEVTDI VLPEGEWRAV PPFAGEDNPV ITAVWQGPAH GLCVFQRG
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