| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SeD_A3749 |
|---|
| Symbol | |
|---|
| ID | 6874378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011205 |
|---|
| Strand | + |
|---|
| Start bp | 3598749 |
|---|
| End bp | 3600848 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642786724 |
|---|
| Product | ggdef domain/eal domain-containing protein |
|---|
| Protein accession | YP_002217358 |
|---|
| Protein GI | 198244652 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 58 |
|---|
| Fosmid unclonability p-value | 0.338574 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGTTA GTGAGTACAA CCACATCCTT GTGGCGGTTT CATTTGCTGT CGCTATTTTT
GCGTCCTATA CCGCATTAAA TATGGCCGGA CGCGTAGCCG AAAGCGCCCG ATCAAACGCC
AGAATATGGC TAATGGGCGG CGGCTTCGCG CTGGGCGTCG GTATTTGGGC GATGCATTTT
GTCGGGATGC TGGCGATGGA TCACGCGATG AACATGCGCT TCGATCCGTT CCTCACCGGC
CTCTCCATGC TGATCGCGAT CGGCTCCTCC CTGTTTGCGC TATGGCTGGT CAGCGCTGAA
AAACTGCGCC TGCGCCGTTT ACTGCCGGGC GCGCTGGTGA TGGGACTGGG CATCAGCGCA
ATGCATTATA CCGGGATGGC GGCGCTGCAA TTTGCTTCCA TTATCGTCTG GAATAGCGCG
TGGGTTGCCC TCTCTATCAT TATCGCGCTA CTGGCGTCCT GCGGCGCGCT GTGGCTCACG
TTCCGCCTGC GTCATGAGGG AACAGATGTC GCCCTGAGGC GAGCAGGCGC CGCGGTATTA
ATGGGGATAG CTATCGCCGG CATGCATTAC GCCGGCATGA AGGCCGCACA CTTTCCCCAA
AACTGGCCGA TGGAGCATCG TGGCGTCGAT AGCAACTGGC TGGCTGTTCT TGTCAGCGTG
GTCGCGCTGA CTATCCTGGG TATTACTCTG CTGGTTTCTT TATTTGACGC CCGGCTTCAG
GCCCGTACCG CACTACTTGC CTCTTCGCTG GCGCAGGCGA ACCAGGAACT GGCGCAGTTG
GCGCTGCATG ATACGCTCAC CCGTTTACCA AACCGGGTGC TTCTTGAGGA TCGTCTGGAA
CAGGCCATCA GCAAAGCGAA TCGGGAAAAC ACGTCTTTCG CGCTACTGTT TATGGATCTG
GATGGCTTTA AAACCGTTAA TGACGCTTAT GGTCATGATA TCGGCGATAA GCTACTGGTA
GCGGTCACGC ATCGTCTGAA CCAACCGCTG AGCGGGCAGT TTACCCTGGC GCGGATTGGC
GGCGACGAAT TTGTGCTGCT TGCAGAAGTC AGCGCGCCTG ACGAAGCGGC TTCCCTTGCC
AGCGCGCTGG TACATTCGAT AGATGCGCCC TTTACAATAG ATCCGTACGA ACTGGTCGTC
ACCCTTAGCG TGGGAATAGC GCTCTATCCG CTGGACGGAA AAAACGAACG GGAACTGATG
TTCAACGCCG ATGCCGCAAT GTACCACACG AAACATACGG GGCGTAACGG ATACCATTTC
TTTCAGCCAT CAATGAATAT GCTGGCGCAA ACCCAACTTC AGCTAATGAA TGACCTGTGG
CTGGCGCTGG AAAGACAAGA GCTCAGGTTA GTGTATCAGC CTAAATTTCA GGCTTCTGCC
GGCCCTATTG TAGGATTTGA GGCCCTGTTG CGCTGGTATC ATCCAAAACA AGGCGTACTG
AATCCTGACC AGTTTTTACC GCTGGCGGAA AAAACGGGTC TTATCGTCAC TATCGGTAGC
TGGGTGATAG ACGAGGCGTG TCGACAGCTC CGCGAGTGGC ACTTACAGGG ATACGACTTA
TGGTCAGTGG CGGTAAATCT GTCCGCCTTA CAATTTGAGC AGCCCGGGCT TGTGGACACC
ATTACGCGGA GCCTGGCCCG ACACAGTATC CGTCCCGATT TATTGATTCT GGAAATCACC
GAAACCACGG CGATGAACAA GCCAGAGCAA AGCGTCGCTA TACTCACCAG ATTAACGGAA
ATGGGGGTTA AGGCCTCTAT TGACGACTTT GGCACCGGTT ATTCCAGCCT TCTCTATCTG
AAACGTCTTC CGGCGTGCGA ACTAAAAATT GATCGCGCTT TCGTACATGA ACTCAGCGAG
GCAGGCGACG GCGCGACCAT TGTTGCGGCT ATTGTCGCGC TGGCGAAAGC GTTAAATCTG
CAAATTGTGG CAGAAGGGGT AGAGAATGAA ACGCAGCAAC AATTTTTGAC CCAGTTAGGA
TGCCATACGC TTCAGGGGTT CCTGCTTGGC AAGCCGCGTA CGGCAGAGGA AATTGCTCGC
GATATTCGGG ATCCTGCCAA TATATTCACA AGGTCAATAT ATAATATCAA CTCAAAATAA
|
|---|
| Protein sequence | MPVSEYNHIL VAVSFAVAIF ASYTALNMAG RVAESARSNA RIWLMGGGFA LGVGIWAMHF
VGMLAMDHAM NMRFDPFLTG LSMLIAIGSS LFALWLVSAE KLRLRRLLPG ALVMGLGISA
MHYTGMAALQ FASIIVWNSA WVALSIIIAL LASCGALWLT FRLRHEGTDV ALRRAGAAVL
MGIAIAGMHY AGMKAAHFPQ NWPMEHRGVD SNWLAVLVSV VALTILGITL LVSLFDARLQ
ARTALLASSL AQANQELAQL ALHDTLTRLP NRVLLEDRLE QAISKANREN TSFALLFMDL
DGFKTVNDAY GHDIGDKLLV AVTHRLNQPL SGQFTLARIG GDEFVLLAEV SAPDEAASLA
SALVHSIDAP FTIDPYELVV TLSVGIALYP LDGKNERELM FNADAAMYHT KHTGRNGYHF
FQPSMNMLAQ TQLQLMNDLW LALERQELRL VYQPKFQASA GPIVGFEALL RWYHPKQGVL
NPDQFLPLAE KTGLIVTIGS WVIDEACRQL REWHLQGYDL WSVAVNLSAL QFEQPGLVDT
ITRSLARHSI RPDLLILEIT ETTAMNKPEQ SVAILTRLTE MGVKASIDDF GTGYSSLLYL
KRLPACELKI DRAFVHELSE AGDGATIVAA IVALAKALNL QIVAEGVENE TQQQFLTQLG
CHTLQGFLLG KPRTAEEIAR DIRDPANIFT RSIYNINSK
|
|---|
| |