Gene SeD_A3619 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSeD_A3619 
Symbol 
ID6874188 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Dublin str. CT_02021853 
KingdomBacteria 
Replicon accessionNC_011205 
Strand
Start bp3474454 
End bp3476496 
Gene Length2043 bp 
Protein Length680 aa 
Translation table11 
GC content59% 
IMG OID642786602 
ProductLppC family protein 
Protein accessionYP_002217238 
Protein GI198245258 
COG category[R] General function prediction only 
COG ID[COG3107] Putative lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones81 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTACCCT CAACATTTTC TCGTTTGAAC GCCGCGCGCG CGCTGCCTGT CGTCCTGGCT 
GCGCTACTTT TCGCCGGGTG CGGCACCCAG GCGCCAGATC AAAGCGCAGC CTATATGCAG
GGTTCAGCGC AAGCTGACTC CGCCTTTTAC CTGCATCAGA TGCAGCAAAG CGCAGATGAT
AGCAAGACCA ACTGGCAATT ACTCGCCATT CATGCACTGC TGAAAGAAGG AAAAAGCCAG
CAGGCCGTCG ACCTGTTCAA CCAACTCCCG CAAAATCTGA ACGATGCCCA GCGTCGCGAA
CAGTCTTTAT TAGCGGTAGA AATCAAACTG GCGCAAAAAG ATGTCGCAGG CGCGCAGGCC
TTGCTGGATA AACTAAAACC TGCCGACTTT GCGCCAAATC AGCAAGCGCG TTACTGGCAG
GCGCAGATCG TTGCCAGCCA GGGACGCCCG TCGCTTACCC TGTTGCGGGC GTTAATCGCC
CAGGAACCGC TACTGGCGGC GAAAGATAAA CAAAAAAATA TCGACGCCAC CTGGCAGGCG
CTCTCCGCCA TGACGCCGGA TCAGGCCAAG ACGTTAGTTA TCAACGCCGA TGAAAACGTG
CTTCAGGGCT GGCTGGATCT GCAACGCGTC TGGTTTGACA ACCGCAACGA TCCGGACATG
CTGAAAGCCG GGATCGCCGA CTGGCAAAAA CGCTACCCGC AAAATCCGGG GGCGAAAATG
CTGCCGACGC AGCTCGTCAA TGTGCAACGT TTCAAACCGG CTTCCACCAG CAAAATCGCT
CTGCTGCTGC CGCTGAACGG TCAGGCTGCC GTGTTTGGCC GTACCATCCA GCAAGGTTTC
GAAGCCGCGA AAAACCTCGG CACCCAGGCG GTGGAGATGC AGCCTGCCGC CGCTCCTGAC
GCGCCGGTCG AACCTGGCGT GGAGGAGACG CAACCACAAA TGACCAACGG CGTCGCCAGT
CCGTCGCAGG CCTCGGTGAG CGATCTGACT GATGACGCTC CAGCCCAGTC CGCTACGCCA
GTCAGCGCGC CACAAACTCC CCCTGCTACA GCAAGCGCGC CGGCGGATCC CTCCGCTGAA
TTAAAAATCT ACGATACCTC TTCCCAGCCG TTGGATCAGG TGCTCGCTCA GGTTCAGCAA
GACGGCGCCA GTATCGTGGT CGGGCCGCTG TTGAAAAACA ATGTGGAAGC GCTGATGAAA
AGCAACACGC CGCTCAACGT GCTGGCGCTC AACCAGCCGG AAACGGTACG TAGCTTCCCT
AATATCTGCT ATTTCGCGCT CTCTCCAGAA GATGAAGCCC GTGACGCGGC GCATCATATT
TATGACCAGG GCAAGCAGTC GCCGCTGCTG TTGATTCCAC GCAGCGCGCT TGGCGATCGC
GTGGCGAACG CCTTCACCCA GGAGTGGCAA AAACTGGGCG GCGGCATCGT GTTACAGCAA
AAATTCGGCT CCGTAGCCGA GCTGAAAATG GGCGTGAACG GCGGCGCGGG TATCGCGTTG
ACGGGCAGTC CGGTCGCCGC CAGCGTGCCT GCGCAGCCTG GCGTCACCAT TGGCGGTCTG
ACCATCCCTG CGCCGCCGAC CGACGCGCAA ATCACCGGCG GCGGACGCGT AGACGCGGTC
TATATTCTGG CTACGCCGGA AGAGATTGGC TTTATCAAAC CGATGATCGC CATGCGTAAC
GGCACCCAGA GCGGCGCGAC GCTGTATGCC AGCTCTCGCA GCGCGCAAGG CACCTCCGGC
CCCGACTTCC GTCTGGAAAT GGAGGGTTTA CAATACAGTG AAATTCCTAT GCTGGCAGGC
GGCAATATGC CGTTGATGCA GCAGGCGCTG AGCGCTGTAC ATAACGACTA TTCTCTGGCG
CGGATGTACG CCATGGGCGT GGATGCCTGG ACGCTGGCGA ACCACTTTTC GCAGATGCGT
CAGGTGCAGG GATTTGAGAT CAATGGTAAT ACCGGCGCAT TAACCGCCAG CCCGGATTGT
GTGATTAACA GGAAGTTATC ATGGCTCAAA TACCAGCAAG GGGAGATTGT TCCCGCCAGC
TAA
 
Protein sequence
MVPSTFSRLN AARALPVVLA ALLFAGCGTQ APDQSAAYMQ GSAQADSAFY LHQMQQSADD 
SKTNWQLLAI HALLKEGKSQ QAVDLFNQLP QNLNDAQRRE QSLLAVEIKL AQKDVAGAQA
LLDKLKPADF APNQQARYWQ AQIVASQGRP SLTLLRALIA QEPLLAAKDK QKNIDATWQA
LSAMTPDQAK TLVINADENV LQGWLDLQRV WFDNRNDPDM LKAGIADWQK RYPQNPGAKM
LPTQLVNVQR FKPASTSKIA LLLPLNGQAA VFGRTIQQGF EAAKNLGTQA VEMQPAAAPD
APVEPGVEET QPQMTNGVAS PSQASVSDLT DDAPAQSATP VSAPQTPPAT ASAPADPSAE
LKIYDTSSQP LDQVLAQVQQ DGASIVVGPL LKNNVEALMK SNTPLNVLAL NQPETVRSFP
NICYFALSPE DEARDAAHHI YDQGKQSPLL LIPRSALGDR VANAFTQEWQ KLGGGIVLQQ
KFGSVAELKM GVNGGAGIAL TGSPVAASVP AQPGVTIGGL TIPAPPTDAQ ITGGGRVDAV
YILATPEEIG FIKPMIAMRN GTQSGATLYA SSRSAQGTSG PDFRLEMEGL QYSEIPMLAG
GNMPLMQQAL SAVHNDYSLA RMYAMGVDAW TLANHFSQMR QVQGFEINGN TGALTASPDC
VINRKLSWLK YQQGEIVPAS